| PubMed ID |
|
25351503 |
Publish Date |
|
2014 Oct |
| Journal |
|
Nat Commun |
Species |
|
Homo sapiens |
| Disease Type |
|
Esophageal adenocarcinoma |
Technology |
|
Next Generation Sequencing |
| Case Number |
|
40 |
Raw Data |
|
EBI: EGAS00001000750 |
| Title |
|
Genomic catastrophes frequently arise in esophageal adenocarcinoma and drive tumorigenesis. |
| Authors |
|
Nones K, Waddell N, Wayte N, Patch AM, Bailey P, Newell F, Holmes O, Fink JL, Quinn MC, Tang YH, Lampe G, Quek K, Loffler KA, Manning S, Idrisoglu S, Miller D, Xu Q, Waddell N, Wilson PJ, Bruxner TJ, Christ AN, Harliwong I, Nourse C, Nourbakhsh E, Anderso |
| Affiliation |
|
Queensland Centre for Medical Genomics, Institute for Molecular Bioscience, The University of Queensland, St Lucia, Brisbane, Queensland 4072, Australia |
| Chromothripsis Definition |
|
Close-by breakpoints: >=30
Copy number states: 2-4
Fragments random joining: NA |
| Download |
|
Study Data File |
| |
| Chromothripsis Cases |
| OESO_0384 |
| |
|
|
| |
Case ID: |
OESO_0384 |
| |
Chromosome: | 13,20 |
| |
Disease type: |
Esophageal adenocarcinoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina HiSeq 2000 |
| |
Affected Gene: |
Gene List |
| |
Download: |
Links File |
| |  |
| OESO_0833 |
| |
|
|
| |
Case ID: |
OESO_0833 |
| |
Chromosome: | 17 |
| |
Disease type: |
Esophageal adenocarcinoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina HiSeq 2000 |
| |
Affected Gene: |
Gene List |
| |
Download: |
Links File |
| |  |
| OESO_1074 |
| |
|
|
| |
Case ID: |
OESO_1074 |
| |
Chromosome: | X |
| |
Disease type: |
Esophageal adenocarcinoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina HiSeq 2000 |
| |
Affected Gene: |
Gene List |
| |
Download: |
Links File |
| |  |
| OESO_1430 |
| |
|
|
| |
Case ID: |
OESO_1430 |
| |
Chromosome: | 6 |
| |
Disease type: |
Esophageal adenocarcinoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina HiSeq 2000 |
| |
Affected Gene: |
Gene List |
| |
Download: |
Links File |
| |  |
| OESO_1527 |
| |
|
|
| |
Case ID: |
OESO_1527 |
| |
Chromosome: | 9 |
| |
Disease type: |
Esophageal adenocarcinoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina HiSeq 2000 |
| |
Affected Gene: |
Gene List |
| |
Download: |
Links File |
| |  |
| OESO_1712 |
| |
|
|
| |
Case ID: |
OESO_1712 |
| |
Chromosome: | 7 |
| |
Disease type: |
Esophageal adenocarcinoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina HiSeq 2000 |
| |
Affected Gene: |
Gene List |
| |
Download: |
Links File |
| |  |
| OESO_3213 |
| |
|
|
| |
Case ID: |
OESO_3213 |
| |
Chromosome: | 8 |
| |
Disease type: |
Esophageal adenocarcinoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina HiSeq 2000 |
| |
Affected Gene: |
Gene List |
| |
Download: |
Links File |
| |  |
| OESO_3845 |
| |
|
|
| |
Case ID: |
OESO_3845 |
| |
Chromosome: | 18 |
| |
Disease type: |
Esophageal adenocarcinoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina HiSeq 2000 |
| |
Affected Gene: |
Gene List |
| |
Download: |
Links File |
| |  |
| OESO_0023 |
| |
|
|
| |
Case ID: |
OESO_0023 |
| |
Chromosome: | 10 |
| |
Disease type: |
Esophageal adenocarcinoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina BeadChip |
| |
| OESO_0031 |
| |
|
|
| |
Case ID: |
OESO_0031 |
| |
Chromosome: | 8 |
| |
Disease type: |
Esophageal adenocarcinoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina BeadChip |
| |
| OESO_0052 |
| |
|
|
| |
Case ID: |
OESO_0052 |
| |
Chromosome: | 10 |
| |
Disease type: |
Esophageal adenocarcinoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina BeadChip |
| |
| OESO_0053 |
| |
|
|
| |
Case ID: |
OESO_0053 |
| |
Chromosome: | 11 |
| |
Disease type: |
Esophageal adenocarcinoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina BeadChip |
| |
| OESO_0008 |
| |
|
|
| |
Case ID: |
OESO_0008 |
| |
Chromosome: | 1 |
| |
Disease type: |
Esophageal adenocarcinoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina BeadChip |
| |
| OESO_0010 |
| |
|
|
| |
Case ID: |
OESO_0010 |
| |
Chromosome: | 9 |
| |
Disease type: |
Esophageal adenocarcinoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina BeadChip |
| |
| OESO_0015 |
| |
|
|
| |
Case ID: |
OESO_0015 |
| |
Chromosome: | 8 |
| |
Disease type: |
Esophageal adenocarcinoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina BeadChip |
| |
| OESO_0021 |
| |
|
|
| |
Case ID: |
OESO_0021 |
| |
Chromosome: | 5 |
| |
Disease type: |
Esophageal adenocarcinoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina BeadChip |
| |
| OESO_40325 |
| |
|
|
| |
Case ID: |
OESO_40325 |
| |
Chromosome: | 6 |
| |
Disease type: |
Esophageal adenocarcinoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina BeadChip |
| |
| OESO_40328 |
| |
|
|
| |
Case ID: |
OESO_40328 |
| |
Chromosome: | 5 |
| |
Disease type: |
Esophageal adenocarcinoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina BeadChip |
| |
| OESO_40357 |
| |
|
|
| |
Case ID: |
OESO_40357 |
| |
Chromosome: | 8 |
| |
Disease type: |
Esophageal adenocarcinoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina BeadChip |
| |
| OESO_40336 |
| |
|
|
| |
Case ID: |
OESO_40336 |
| |
Chromosome: | 22 |
| |
Disease type: |
Esophageal adenocarcinoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina BeadChip |
| |
| OESO_6003 |
| |
|
|
| |
Case ID: |
OESO_6003 |
| |
Chromosome: | 16 |
| |
Disease type: |
Esophageal adenocarcinoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina BeadChip |
| |
| OESO_40364 |
| |
|
|
| |
Case ID: |
OESO_40364 |
| |
Chromosome: | 10 |
| |
Disease type: |
Esophageal adenocarcinoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina BeadChip |
| |
| OESO_40365 |
| |
|
|
| |
Case ID: |
OESO_40365 |
| |
Chromosome: | 7 |
| |
Disease type: |
Esophageal adenocarcinoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina BeadChip |
| |
| OESO_0001 |
| |
|
|
| |
Case ID: |
OESO_0001 |
| |
Chromosome: | 18 |
| |
Disease type: |
Esophageal adenocarcinoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina BeadChip |
| |
| OESO_0056 |
| |
|
|
| |
Case ID: |
OESO_0056 |
| |
Chromosome: | 8 |
| |
Disease type: |
Esophageal adenocarcinoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina BeadChip |
| |
| OESO_0061 |
| |
|
|
| |
Case ID: |
OESO_0061 |
| |
Chromosome: | 3 |
| |
Disease type: |
Esophageal adenocarcinoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina BeadChip |
| |
| OESO_0063 |
| |
|
|
| |
Case ID: |
OESO_0063 |
| |
Chromosome: | 9 |
| |
Disease type: |
Esophageal adenocarcinoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina BeadChip |
| |
| OESO_0572 |
| |
|
|
| |
Case ID: |
OESO_0572 |
| |
Chromosome: | 10 |
| |
Disease type: |
Esophageal adenocarcinoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina BeadChip |
| |
| OESO_1642 |
| |
|
|
| |
Case ID: |
OESO_1642 |
| |
Chromosome: | 6 |
| |
Disease type: |
Esophageal adenocarcinoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina BeadChip |
| |
| OESO_2442 |
| |
|
|
| |
Case ID: |
OESO_2442 |
| |
Chromosome: | 9 |
| |
Disease type: |
Esophageal adenocarcinoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina BeadChip |
| |
| OESO_3519 |
| |
|
|
| |
Case ID: |
OESO_3519 |
| |
Chromosome: | 8 |
| |
Disease type: |
Esophageal adenocarcinoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina BeadChip |
| |
| OESO_6005 |
| |
|
|
| |
Case ID: |
OESO_6005 |
| |
Chromosome: | 9 |
| |
Disease type: |
Esophageal adenocarcinoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina BeadChip |
| |
| OESO_6036 |
| |
|
|
| |
Case ID: |
OESO_6036 |
| |
Chromosome: | 14 |
| |
Disease type: |
Esophageal adenocarcinoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina BeadChip |
| |
| OESO_6039 |
| |
|
|
| |
Case ID: |
OESO_6039 |
| |
Chromosome: | 12 |
| |
Disease type: |
Esophageal adenocarcinoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina BeadChip |
| |
| OESO_6040 |
| |
|
|
| |
Case ID: |
OESO_6040 |
| |
Chromosome: | 18 |
| |
Disease type: |
Esophageal adenocarcinoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina BeadChip |
| |
| OESO_6052 |
| |
|
|
| |
Case ID: |
OESO_6052 |
| |
Chromosome: | 1 |
| |
Disease type: |
Esophageal adenocarcinoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina BeadChip |
| |
| OESO_6081 |
| |
|
|
| |
Case ID: |
OESO_6081 |
| |
Chromosome: | 5 |
| |
Disease type: |
Esophageal adenocarcinoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina BeadChip |
| |
| OESO_6082 |
| |
|
|
| |
Case ID: |
OESO_6082 |
| |
Chromosome: | 1 |
| |
Disease type: |
Esophageal adenocarcinoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina BeadChip |
| |
| OESO_6087 |
| |
|
|
| |
Case ID: |
OESO_6087 |
| |
Chromosome: | 2 |
| |
Disease type: |
Esophageal adenocarcinoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina BeadChip |
| |
| OESO_6091 |
| |
|
|
| |
Case ID: |
OESO_6091 |
| |
Chromosome: | 1 |
| |
Disease type: |
Esophageal adenocarcinoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina BeadChip |
| |
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