ChromothripsisDB: a curated database of chromothripsis
 
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  Fusion Gene
  PubMed ID: 25351503 Case ID: OESO_1074 Disease: Esophageal adenocarcinoma Genome Assembly: GRCh37/hg19
Gene Symbol 1 Chromosome1 Description 1 Gene Symbol 2 Chromosome2 Description 2
PPP1R3F X protein phosphatase 1, regulatory subunit 3F ATRX X alpha thalassemia/mental retardation syndrome X-linked
 
 
  Affected Gene
  PubMed ID: 25351503 Case ID: OESO_1074 Disease: Esophageal adenocarcinoma Genome Assembly: GRCh37/hg19
Gene Symbol Entrez Gene Chromosome Start End Description
FHIT 2272 3 59735036 61237133 fragile histidine triad
MACROD2 140733 20 13976015 16033842 MACRO domain containing 2
WWOX 51741 16 78133310 79246564 WW domain containing oxidoreductase
CDK12 51755 17 37617764 37721160 cyclin-dependent kinase 12
CDK14 5218 7 90095738 90839905 cyclin-dependent kinase 14
ADAM32 203102 8 38964509 39142430 ADAM metallopeptidase domain 32
PTPRD 5789 9 8314246 10612723 protein tyrosine phosphatase, receptor type, D
PARK2 5071 6 161768452 163148803 parkin RBR E3 ubiquitin protein ligase
ALDH1A2 8854 15 58245622 58790065 aldehyde dehydrogenase 1 family, member A2
IKZF3 22806 17 37921198 38020441 IKAROS family zinc finger 3 (Aiolos)
IL1RAPL2 26280 X 104566199 105769729 interleukin 1 receptor accessory protein-like 2
NOX4 50507 11 89057524 89322779 NADPH oxidase 4
ALG9 79796 11 111652919 111742305 ALG9, alpha-1,2-mannosyltransferase
RFC3 5983 13 34392186 34540695 replication factor C (activator 1) 3, 38kDa
STARD3 10948 17 37793318 37819737 StAR-related lipid transfer (START) domain containing 3
ZNF587 84914 19 58361225 58376480 zinc finger protein 587
IMMP2L 83943 7 110303110 111202573 IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)
SMYD3 64754 1 245912642 246670614 SET and MYND domain containing 3
CTNNA3 29119 10 67672276 69455927 catenin (cadherin-associated protein), alpha 3
GMDS 2762 6 1624041 2245926 GDP-mannose 4,6-dehydratase
SCAPER 49855 15 76640526 77197785 S-phase cyclin A-associated protein in the ER
DIAPH2 1730 X 96684663 97600598 diaphanous-related formin 2
KIF26B 55083 1 245318287 245872733 kinesin family member 26B
HDHD1 8226 X 7048920 7148190 haloacid dehalogenase-like hydrolase domain containing 1
SAMD5 389432 6 147830063 148058683 sterile alpha motif domain containing 5
UTRN 7402 6 144606837 145174170 utrophin
ASCC3 10973 6 100956070 101329248 activating signal cointegrator 1 complex subunit 3
VWA8 23078 13 42140973 42535256 von Willebrand factor A domain containing 8
FNDC3B 64778 3 171757418 172119455 fibronectin type III domain containing 3B
C10orf11 83938 10 77360998 78319925 chromosome 10 open reading frame 11
SGCD 6444 5 155297354 156194799 sarcoglycan, delta (35kDa dystrophin-associated glycoprotein)
TMEM39B 55116 1 32537632 32568467 transmembrane protein 39B
C7 730 5 40909354 40983041 complement component 7
CLINT1 9685 5 157212751 157286183 clathrin interactor 1
C5orf42 65250 5 37106330 37249530 chromosome 5 open reading frame 42
STXBP4 252983 17 53046088 53241646 syntaxin binding protein 4
SLCO5A1 81796 8 70579282 70747299 solute carrier organic anion transporter family, member 5A1
CGNL1 84952 15 57668165 57842925 cingulin-like 1
MAMDC2 256691 9 72658497 72841886 MAM domain containing 2
FMN1 342184 15 33057747 33486897 formin 1
GNGT1 2792 7 93220885 93540577 guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1
TRIO 7204 5 14143811 14532235 trio Rho guanine nucleotide exchange factor
FAM135B 51059 8 139142266 139509065 family with sequence similarity 135, member B
FGF13 2258 X 138631573 139222889 fibroblast growth factor 13
KCNAB1 7881 3 155755490 156256545 potassium channel, voltage gated subfamily A regulatory beta subunit 1
C1orf168 199920 1 57184477 57285369 chromosome 1 open reading frame 168
SYCP1 6847 1 115397424 115537991 synaptonemal complex protein 1
SPOCK2 9806 10 73818793 73848790 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2
ATXN2 6311 12 111890018 112037480 ataxin 2
PDS5B 23047 13 33160564 33352157 PDS5 cohesin associated factor B
KL 9365 13 33590207 33640282 klotho
STARD13 90627 13 33677272 33924767 StAR-related lipid transfer (START) domain containing 13
COG6 57511 13 40229764 40365802 component of oligomeric golgi complex 6
KLF13 51621 15 31619058 31727868 Kruppel-like factor 13
SHC4 399694 15 49115932 49255641 SHC (Src homology 2 domain containing) family, member 4
RBBP6 5930 16 24549014 24584184 retinoblastoma binding protein 6
MYO1D 4642 17 30819540 31204195 myosin ID
FBXL20 84961 17 37415384 37558776 F-box and leucine-rich repeat protein 20
MIB1 57534 18 19284918 19450918 mindbomb E3 ubiquitin protein ligase 1
ZNF587B 100293516 19 58331099 58370018 zinc finger protein 587B
ZNF814 730051 19 58360099 58400442 zinc finger protein 814
MYO1B 4430 2 192109911 192290115 myosin IB
RFT1 91869 3 53122499 53164478 RFT1 homolog (S. cerevisiae)
IFT80 57560 3 159974774 160117668 intraflagellar transport 80
ADAMTS19 171019 5 128795958 129074376 ADAM metallopeptidase with thrombospondin type 1 motif, 19
CCDC132 55610 7 92861653 92988338 coiled-coil domain containing 132
RAB11FIP1 80223 8 37716136 37756985 RAB11 family interacting protein 1 (class I)
ADCY8 114 8 131792547 132054672 adenylate cyclase 8 (brain)
MRRF 92399 9 125026882 125085743 mitochondrial ribosome recycling factor
REPS2 9185 X 16946691 17220732 RALBP1 associated Eps domain containing 2
EDA 1896 X 69616067 70039472 ectodysplasin A
ATRX 546 X 77504878 77786269 alpha thalassemia/mental retardation syndrome X-linked
SLC25A53 401612 X 104099214 104157027 solute carrier family 25, member 53
TSC22D3 1831 X 107713221 107777329 TSC22 domain family, member 3
CXorf66 347487 X 139955725 139965518 chromosome X open reading frame 66
TTC28 23331 22 28374004 29075853 tetratricopeptide repeat domain 28
DMD 1756 X 31119219 33339609 dystrophin
ROBO2 6092 3 75955846 77699115 roundabout, axon guidance receptor, homolog 2 (Drosophila)
CADM2 253559 3 85008132 86123579 cell adhesion molecule 2
SNX30 401548 9 115513118 115643951 sorting nexin family member 30
TMEM241 85019 18 20777108 21017925 transmembrane protein 241
MDGA2 161357 14 47308826 48144157 MAM domain containing glycosylphosphatidylinositol anchor 2
BCLAF1 9774 6 136578001 136610989 BCL2-associated transcription factor 1
STS 412 X 7146517 7354641 steroid sulfatase (microsomal), isozyme S
ASCC1 51008 10 73856278 73976892 activating signal cointegrator 1 complex subunit 1
RNF43 54894 17 56429861 56494956 ring finger protein 43
KDM6A 7403 X 44873175 45112779 lysine (K)-specific demethylase 6A
SHANK2 22941 11 70313961 70963623 SH3 and multiple ankyrin repeat domains 2
OPCML 4978 11 132284871 133402414 opioid binding protein/cell adhesion molecule-like
ERBB4 2066 2 212240446 213403565 erb-b2 receptor tyrosine kinase 4
IL1RAPL1 11141 X 28587564 29956350 interleukin 1 receptor accessory protein-like 1
NPAS3 64067 14 33404139 34273382 neuronal PAS domain protein 3
ZBTB8A 653121 1 33005028 33071540 zinc finger and BTB domain containing 8A
ADAM18 8749 8 39442008 39587583 ADAM metallopeptidase domain 18
POU2AF1 5450 11 111222977 111326355 POU class 2 associating factor 1
PIKFYVE 200576 2 209130991 209223475 phosphoinositide kinase, FYVE finger containing
RBBP8 5932 18 20378224 20606451 retinoblastoma binding protein 8
NOTCH2 4853 1 120454176 120612240 notch 2
RNF111 54778 15 59157374 59389618 ring finger protein 111
FREM2 341640 13 39261266 39460074 FRAS1 related extracellular matrix protein 2
NEO1 4756 15 73344051 73597547 neogenin 1
ENOX1 55068 13 43787654 44361044 ecto-NOX disulfide-thiol exchanger 1
DPYD 1806 1 97543299 98386605 dihydropyrimidine dehydrogenase
JMJD1C 221037 10 64926981 65225722 jumonji domain containing 1C
CHST3 9469 10 73724123 73773322 carbohydrate (chondroitin 6) sulfotransferase 3
CD6 923 11 60739115 60787849 CD6 molecule
GDPD4 220032 11 76927603 77012732 glycerophosphodiester phosphodiesterase domain containing 4
NDUFC2 4718 11 77779350 77791265 NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa
RAB38 23682 11 87846410 87908635 RAB38, member RAS oncogene family
PKNOX2 63876 11 125034583 125303285 PBX/knotted 1 homeobox 2
CDON 50937 11 125825691 125933230 cell adhesion associated, oncogene regulated
KIRREL3 84623 11 126293254 126873355 kin of IRRE like 3 (Drosophila)
APLP2 334 11 129939732 130014699 amyloid beta (A4) precursor-like protein 2
ZBTB44 29068 11 130096572 130184581 zinc finger and BTB domain containing 44
PXN 5829 12 120648250 120703574 paxillin
SETD8 387893 12 123868320 123893905 SET domain containing (lysine methyltransferase) 8
IFT88 8100 13 21140585 21265503 intraflagellar transport 88
TRPC4 7223 13 38210773 38444562 transient receptor potential cation channel, subfamily C, member 4
RYR3 6263 15 33603163 34158303 ryanodine receptor 3
TRIM69 140691 15 45021186 45060027 tripartite motif containing 69
GALK2 2585 15 49447853 49660066 galactokinase 2
VPS13C 54832 15 62144588 62352672 vacuolar protein sorting 13 homolog C (S. cerevisiae)
WDR93 56964 15 90234028 90286869 WD repeat domain 93
COX10 1352 17 13972813 14111994 COX10 heme A:farnesyltransferase cytochrome c oxidase assembly factor
SLFN5 162394 17 33570055 33600674 schlafen family member 5
TCAP 8557 17 37820440 37822808 titin-cap
ZNF98 148198 19 22573821 22715287 zinc finger protein 98
PVRL2 5819 19 45349432 45392485 poliovirus receptor-related 2 (herpesvirus entry mediator B)
MEIS3 56917 19 47906381 47922780 Meis homeobox 3
LMTK3 114783 19 48988528 49016446 lemur tyrosine kinase 3
ZNF805 390980 19 57751973 57766503 zinc finger protein 805
ZNF417 147687 19 58411664 58427978 zinc finger protein 417
CHMP2A 27243 19 59062933 59066491 charged multivesicular body protein 2A
SLC39A10 57181 2 196440701 196602426 solute carrier family 39 (zinc transporter), member 10
MOB4 25843 2 198380295 198418423 MOB family member 4, phocein
TGM2 7052 20 36756863 36794980 transglutaminase 2
CIDEC 63924 3 9908398 9921938 cell death-inducing DFFA-like effector c
IL17RE 132014 3 9944296 9958086 interleukin 17 receptor E
GADL1 339896 3 30767692 30936257 glutamate decarboxylase-like 1
MAP3K5 4217 6 136878185 137113656 mitogen-activated protein kinase kinase kinase 5
POM121 9883 7 72349936 72421979 POM121 transmembrane nucleoporin
CALCR 799 7 93053799 93204042 calcitonin receptor
PROSC 11212 8 37620111 37637283 proline synthetase co-transcribed homolog (bacterial)
CTPS2 56474 X 16587999 16712979 CTP synthase 2
PRRG1 5638 X 37349275 37457295 proline rich Gla (G-carboxyglutamic acid) 1
MAOB 4129 X 43766610 43882475 monoamine oxidase B
ZNF674 641339 X 46497725 46545459 zinc finger protein 674
PPP1R3F 89801 X 49269829 49288095 protein phosphatase 1, regulatory subunit 3F
SHROOM4 57477 X 50576993 50814139 shroom family member 4
HDAC8 55869 X 72329516 72573103 histone deacetylase 8
MAGT1 84061 X 77826364 77895568 magnesium transporter 1
BTK 695 X 101349447 101390796 Bruton agammaglobulinemia tyrosine kinase
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Chromothripsis database. 2025 Cai Laboratory