CTLPScanner: A Web Server for Chromothripsis-like Pattern Detection
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Data Accession
Input Sample ID:
Sample ID
(Example:
GSM784216
;
TCGA_UCS_1344684
)
Or Select Batch Accession:
Cancer Type:
abdomen
adrenal cortex
bone marrow
bones and joints
brain
breast
cerebellum
cervix uteri
connective and soft tissue
corpus uteri
esophagus
extrahepatic and unspecified bile ducts
hematopoietic and reticuloendothelial systems
kidney
large intestine, excl. rectum and rectosigmoid junction
liver
lung and bronchus
lymph nodes
mediastinum
nasopharynx
Nervous system
Optic chiasm
Oropharynx
ovary
pancreas
peripheral nervs incl. autonomous
pineal gland
pituitary gland
pleura
prostate gland
rectum
renal pelvis, ureter
retina
salivary gland
skin
small intestine
Spinal cord
Spleen
stomach
testis
thymus
thyroid gland
tongue
Tonsil
urinary bladder
Batch Accession:
Browse GEO accession list by cancer loci:
Select ...
Adrenal cortex
Bone marrow
Bones and joints
Brain
Breast
Cerebellum
Cerebrum
Cervix uteri
Connective and soft tissue
Esophagus
Hematopoietic and reticuloendothelial systems
Kidney
Large intestine
Liver
Lung and bronchus
Lymph nodes
Nasopharynx
Nervous system
Oropharynx
Others
Ovary
Pancreas
Peripheral nervs incl. autonomous
Pleura
Prostate gland
Rectum
Skin
Small intestine
Spinal cord
Spleen
Stomach
Testis
Thyroid gland
Urinary bladder
Browse TCGA accession list by cancer type:
Select ...
Adrenocortical carcinoma [ACC]
Bladder Urothelial Carcinoma [BLCA]
Breast invasive carcinoma [BRCA]
Cervical squamous cell carcinoma [CESC]
Cholangiocarcinoma [CHOL]
Colon adenocarcinoma [COAD]
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma [DLBC]
Esophageal carcinoma [ESCA]
Glioblastoma multiforme [GBM]
Head and Neck squamous cell carcinoma [HNSC]
Kidney Chromophobe [KICH]
Kidney renal clear cell carcinoma [KIRC]
Kidney renal papillary cell carcinoma [KIRP]
Acute Myeloid Leukemia [LAML]
Brain Lower Grade Glioma [LGG]
Liver hepatocellular carcinoma [LIHC]
Lung adenocarcinoma [LUAD]
Lung squamous cell carcinoma [LUSC]
Mesothelioma [MESO]
Ovarian serous cystadenocarcinoma [OV]
Pancreatic adenocarcinoma [PAAD]
Pheochromocytoma and Paraganglioma [PCPG]
Prostate adenocarcinoma [PRAD]
Rectum adenocarcinoma [READ]
Sarcoma [SARC]
Skin Cutaneous Melanoma [SKCM]
Stomach adenocarcinoma [STAD]
Testicular Germ Cell Tumors [TGCT]
Thyroid carcinoma [THCA]
Thymoma [THYM]
Uterine Corpus Endometrial Carcinoma [UCEC]
Uterine Carcinosarcoma [UCS]
Uveal Melanoma [UVM]
Download accession list of all samples
Scanner parameters & thresholds
Copy number status change times ≥
Log10 of likelihood ratio ≥
Minimum segment size (Kb):
Signal distance between adjacent segments:
Visualization options
Signal value for genomic gains ≥
Color for genomic gains:
Red
Yellow
Green
Blue
Signal value for genomic losses ≤
Color for genomic losses:
Red
Yellow
Green
Blue
Show detected chromothripsis-like region only
