ChromothripsisDB: a curated database of chromothripsis
 
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  Study
PubMed ID   25719666 Publish Date   2015 Feb
Journal   Nature Species   Homo sapiens
Disease Type   Pancreatic cancer Technology   Next Generation Sequencing
Case Number   10 Raw Data  
Title   Whole genomes redefine the mutational landscape of pancreatic cancer
Authors   Waddell N, Pajic M, Patch AM, Chang DK, Kassahn KS, Bailey P, Johns AL, Miller D, Nones K, Quek K, Quinn MC, Robertson AJ, Fadlullah MZ, Bruxner TJ, Christ AN, Harliwong I, Idrisoglu S, Manning S, Nourse C, Nourbakhsh E, Wani S, Wilson PJ, Markham E, Cloonan N, Anderson MJ, Fink JL, Holmes O, Kazakoff SH, Leonard C, Newell F, Poudel B, Song S, Taylor D, Waddell N, Wood S, Xu Q, Wu J, Pinese M, Cowley MJ, Lee HC, Jones MD, Nagrial AM, Humphris J, Chantrill LA, Chin V, Steinmann AM, Mawson A, Humphrey ES, Colvin EK, Chou A, Scarlett CJ, Pinho AV, Giry-Laterriere M, Rooman I, Samra JS, Kench JG, Pettitt JA, Merrett ND, Toon C, Epari K, Nguyen NQ, Barbour A, Zeps N, Jamieson NB, Graham JS, Niclou SP, Bjerkvig R, Grutzmann R, Aust D, Hruban RH, Maitra A, Iacobuzio-Donahue CA, Wolfgang CL, Morgan RA, Lawlor RT, Corbo V, Bassi C, Falconi M, Zamboni G, Tortora G, Tempero MA; Australian Pancreatic Cancer Genome Initiative, Gill AJ, Eshleman JR, Pilarsky C, Scarpa A, Musgrove EA, Pearson JV, Biankin AV, Grimmond SM
Affiliation   Queensland Centre for Medical Genomics, Institute for Molecular Bioscience, The University of Queensland, St Lucia, Brisbane, Queensland 4072, Australia
Chromothripsis Definition   Close-by breakpoints: >=42
Copy number states: 2-3
Fragments random joining: Yes
Download   Study Data File
 
Chromothripsis Cases
  ICGC_0004
     
  Case ID: ICGC_0004
  Chromosome:8
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2000
  Affected Gene: Gene List
  Download: Copy Number File   Links File
  ICGC_0059
     
  Case ID: ICGC_0059
  Chromosome:3
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2000
  Affected Gene: Gene List
  Download: Copy Number File   Links File
  ICGC_0069
     
  Case ID: ICGC_0069
  Chromosome:15
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2000
  Affected Gene: Gene List
  Download: Copy Number File   Links File
  ICGC_0131
     
  Case ID: ICGC_0131
  Chromosome:14
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2000
  Affected Gene: Gene List
  Download: Copy Number File   Links File
  ICGC_0154
     
  Case ID: ICGC_0154
  Chromosome:18
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2000
  Affected Gene: Gene List
  Download: Copy Number File   Links File
  ICGC_0214
     
  Case ID: ICGC_0214
  Chromosome:2
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2000
  Affected Gene: Gene List
  Download: Copy Number File   Links File
  ICGC_0242
     
  Case ID: ICGC_0242
  Chromosome:15
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2000
  Affected Gene: Gene List
  Download: Copy Number File   Links File
  ICGC_0285
     
  Case ID: ICGC_0285
  Chromosome:14
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2000
  Download: Copy Number File   Links File
  ICGC_0300
     
  Case ID: ICGC_0300
  Chromosome:1
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2000
  Affected Gene: Gene List
  Download: Copy Number File   Links File
  ICGC_0326
     
  Case ID: ICGC_0326
  Chromosome:18
  Disease type: Pancreatic cancer
  Technology: Next Generation Sequencing
  Platform: Illumina HiSeq 2000
  Affected Gene: Gene List
  Download: Copy Number File   Links File
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