| PubMed ID |
|
23583981 |
Publish Date |
|
2013 Jun |
| Journal |
|
Nature Genetics |
Species |
|
Homo sapiens |
| Disease Type |
|
Glioma |
Technology |
|
Next Generation Sequencing |
| Case Number |
|
5 |
Raw Data |
|
|
| Title |
|
Whole-genome sequencing identifies genetic alterations in pediatric low-grade gliomas |
| Authors |
|
Zhang J, Wu G, Miller CP, Tatevossian RG, Dalton JD, Tang B, Orisme W, Punchihewa C, Parker M, Qaddoumi I, Boop FA, Lu C, Kandoth C, Ding L, Lee R, Huether R, Chen X, Hedlund E, Nagahawatte P, Rusch M, Boggs K, Cheng J, Becksfort J, Ma J, Song G, Li Y, Wei L, Wang J, Shurtleff S, Easton J, Zhao D, Fulton RS, Fulton LL, Dooling DJ, Vadodaria B, Mulder HL, Tang C, Ochoa K, Mullighan CG, Gajjar A, Kriwacki R, Sheer D, Gilbertson RJ, Mardis ER, Wilson RK, Downing JR, Baker SJ, Ellison DW; St. Jude Children's Research Hospital -Washington University Pediatric Cancer Genome Project |
| Affiliation |
|
Department of Computational Biology, St. Jude Children's Research Hospital, Memphis, Tennessee, USA |
| Chromothripsis Definition |
|
Close-by breakpoints: >=6
Copy number states: 2-3
Fragments random joining: NA |
| Download |
|
Study Data File |
| |
| Chromothripsis Cases |
| SJLGG005 |
| |
|
|
| |
Case ID: |
SJLGG005 |
| |
Chromosome: | 5,6 |
| |
Disease type: |
Glioma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina Genome Analyzer IIx or HighSeq |
| |
Affected Gene: |
Gene List |
| |
Download: |
Copy Number File Links File |
| |  | | SJLGG033 |
| |
|
|
| |
Case ID: |
SJLGG033 |
| |
Chromosome: | 8 |
| |
Disease type: |
Glioma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina Genome Analyzer IIx or HighSeq |
| |
Affected Gene: |
Gene List |
| |
Download: |
Copy Number File Links File |
| |  | | SJLGG035 |
| |
|
|
| |
Case ID: |
SJLGG035 |
| |
Chromosome: | 6 |
| |
Disease type: |
Glioma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina Genome Analyzer IIx or HighSeq |
| |
Affected Gene: |
Gene List |
| |
Download: |
Copy Number File Links File |
| |  | | SJLGG038 |
| |
|
|
| |
Case ID: |
SJLGG038 |
| |
Chromosome: | 9 |
| |
Disease type: |
Glioma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina Genome Analyzer IIx or HighSeq |
| |
Affected Gene: |
Gene List |
| |
Download: |
Copy Number File Links File |
| |  | | SJLGG039 |
| |
|
|
| |
Case ID: |
SJLGG039 |
| |
Chromosome: | 1,3,11,12 |
| |
Disease type: |
Glioma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina Genome Analyzer IIx or HighSeq |
| |
Affected Gene: |
Gene List |
| |
Download: |
Copy Number File Links File |
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