| PubMed ID |
|
22832581 |
Publish Date |
|
2012 Aug |
| Journal |
|
Nature |
Species |
|
Homo sapiens |
| Disease Type |
|
Medulloblastoma |
Technology |
|
Next Generation Sequencing |
| Case Number |
|
13 |
Raw Data |
|
GEO: GSE37385 EBI: EGAD00001000158 |
| Title |
|
Subgroup-specific structural variation across 1,000 medulloblastoma genomes |
| Authors |
|
Northcott PA, Shih DJ, Peacock J, Garzia L, Morrissy AS, Zichner T, Stutz AM, Korshunov A, Reimand J, Schumacher SE, Beroukhim R, Ellison DW, Marshall CR, Lionel AC, Mack S, Dubuc A, Yao Y, Ramaswamy V, Luu B, Rolider A, Cavalli FM, Wang X, Remke M, Wu X, Chiu RY, Chu A, Chuah E, Corbett RD, Hoad GR, Jackman SD, Li Y, Lo A, Mungall KL, Nip KM, Qian JQ, Raymond AG, Thiessen NT, Varhol RJ, Birol I, Moore RA, Mungall AJ, Holt R, Kawauchi D, Roussel MF, Kool M, Jones DT, Witt H, Fernandez-L A, Kenney AM, Wechsler-Reya RJ, Dirks P, Aviv T, Grajkowska WA, Perek-Polnik M, Haberler CC, Delattre O, Reynaud SS, Doz FF, Pernet-Fattet SS, Cho BK, Kim SK, Wang KC, Scheurlen W, Eberhart CG, Fevre-Montange M, Jouvet A, Pollack IF, Fan X, Muraszko KM, Gillespie GY, Di Rocco C, Massimi L, Michiels EM, Kloosterhof NK, French PJ, Kros JM, Olson JM, Ellenbogen RG, Zitterbart K, Kren L, Thompson RC, Cooper MK, Lach B, McLendon RE, Bigner DD, Fontebasso A, Albrecht S, Jabado N, Lindsey JC, Bailey S, Gupta N, Weiss WA, Bognar L, Klekner A, Van Meter TE, Kumabe T, Tominaga T, Elbabaa SK, Leonard JR, Rubin JB, Liau LM, Van Meir EG, Fouladi M, Nakamura H, Cinalli G, Garami M, Hauser P, Saad AG, Iolascon A, Jung S, Carlotti CG, Vibhakar R, Ra YS, Robinson S, Zollo M, Faria CC, Chan JA, Levy ML, Sorensen PH, Meyerson M, Pomeroy SL, Cho YJ, Bader GD, Tabori U, Hawkins CE, Bouffet E, Scherer SW, Rutka JT, Malkin D, Clifford SC, Jones SJ, Korbel JO, Pfister SM, Marra MA, Taylor MD |
| Affiliation |
|
Developmental & Stem Cell Biology Program, The Hospital for Sick Children,101 College Street, TMDT-11-401M, Toronto, Ontario M5G 1L7, Canada. |
| Chromothripsis Definition |
|
Close-by breakpoints: >=20
Copy number states: 2-4
Fragments random joining: NA |
| Download |
|
Study Data File |
| |
| Chromothripsis Cases |
| MB-182 |
| |
|
|
| |
Case ID: |
MB-182 |
| |
Chromosome: | 8 |
| |
Disease type: |
Medulloblastoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina HiSeq 2000 |
| |
Affected Gene: |
Gene List |
| | | MB-506 |
| |
|
|
| |
Case ID: |
MB-506 |
| |
Chromosome: | 8 |
| |
Disease type: |
Medulloblastoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina HiSeq 2000 |
| |
Affected Gene: |
Gene List |
| | | MB-591 |
| |
|
|
| |
Case ID: |
MB-591 |
| |
Chromosome: | 8 |
| |
Disease type: |
Medulloblastoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina HiSeq 2000 |
| |
Affected Gene: |
Gene List |
| | | MB-586 |
| |
|
|
| |
Case ID: |
MB-586 |
| |
Chromosome: | 8 |
| |
Disease type: |
Medulloblastoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina HiSeq 2000 |
| |
Affected Gene: |
Gene List |
| | | MB-524 |
| |
|
|
| |
Case ID: |
MB-524 |
| |
Chromosome: | 8 |
| |
Disease type: |
Medulloblastoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina HiSeq 2000 |
| |
Affected Gene: |
Gene List |
| | | MB-1003 |
| |
|
|
| |
Case ID: |
MB-1003 |
| |
Chromosome: | 8 |
| |
Disease type: |
Medulloblastoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina HiSeq 2000 |
| |
Affected Gene: |
Gene List |
| | | MB-1377 |
| |
|
|
| |
Case ID: |
MB-1377 |
| |
Chromosome: | 8 |
| |
Disease type: |
Medulloblastoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina HiSeq 2000 |
| |
Affected Gene: |
Gene List |
| | | MB-1240 |
| |
|
|
| |
Case ID: |
MB-1240 |
| |
Chromosome: | 8 |
| |
Disease type: |
Medulloblastoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina HiSeq 2000 |
| |
Affected Gene: |
Gene List |
| | | MB-1338 |
| |
|
|
| |
Case ID: |
MB-1338 |
| |
Chromosome: | 8 |
| |
Disease type: |
Medulloblastoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina HiSeq 2000 |
| |
Affected Gene: |
Gene List |
| | | MB-548 |
| |
|
|
| |
Case ID: |
MB-548 |
| |
Chromosome: | 8 |
| |
Disease type: |
Medulloblastoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina HiSeq 2000 |
| |
Affected Gene: |
Gene List |
| | | D458 |
| |
|
|
| |
Case ID: |
D458 |
| |
Chromosome: | 8 |
| |
Disease type: |
Medulloblastoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina HiSeq 2000 |
| |
Affected Gene: |
Gene List |
| | | D425 |
| |
|
|
| |
Case ID: |
D425 |
| |
Chromosome: | 8 |
| |
Disease type: |
Medulloblastoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina HiSeq 2000 |
| |
Affected Gene: |
Gene List |
| | | MED8A |
| |
|
|
| |
Case ID: |
MED8A |
| |
Chromosome: | 8 |
| |
Disease type: |
Medulloblastoma |
| |
Technology: |
Next Generation Sequencing |
| |
Platform: |
Illumina HiSeq 2000 |
| |
Affected Gene: |
Gene List |
| | | top |
|
