ChromothripsisDB: a curated database of chromothripsis
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	Fusion Gene
	PubMed ID: 24705251	Case ID: SJHGG078_A	Disease: Glioma	Genome Assembly: GRCh37/hg19
Gene Symbol 1 Chromosome1 Description 1 Gene Symbol 2 Chromosome2 Description 2 ABLIM2 4 actin binding LIM protein family, member 2 CRMP1 4 collapsin response mediator protein 1 AFAP1 4 actin filament associated protein 1 CTBP1 4 C-terminal binding protein 1 AFAP1 4 actin filament associated protein 1 GAK 4 cyclin G associated kinase C1QTNF7 4 C1q and tumor necrosis factor related protein 7 SORCS2 4 sortilin-related VPS10 domain containing receptor 2 CC2D2A 4 coiled-coil and C2 domain containing 2A SLC2A9 4 solute carrier family 2 (facilitated glucose transporter), member 9 CTBP1 4 C-terminal binding protein 1 RGS12 4 regulator of G-protein signaling 12 EVC2 4 Ellis van Creveld syndrome 2 CTBP1 4 C-terminal binding protein 1 EVC2 4 Ellis van Creveld syndrome 2 GAK 4 cyclin G associated kinase GAK 4 cyclin G associated kinase CTBP1 4 C-terminal binding protein 1 GAK 4 cyclin G associated kinase GAK 4 cyclin G associated kinase HTT 4 huntingtin HTT 4 huntingtin HTT 4 huntingtin STK32B 4 serine/threonine kinase 32B SORCS2 4 sortilin-related VPS10 domain containing receptor 2 CTBP1 4 C-terminal binding protein 1 SORCS2 4 sortilin-related VPS10 domain containing receptor 2 EVC2 4 Ellis van Creveld syndrome 2 SORCS2 4 sortilin-related VPS10 domain containing receptor 2 GAK 4 cyclin G associated kinase STK32B 4 serine/threonine kinase 32B HTT 4 huntingtin TAPT1 4 transmembrane anterior posterior transformation 1 LDB2 4 LIM domain binding 2

	Affected Gene
	PubMed ID: 24705251	Case ID: SJHGG078_A	Disease: Glioma	Genome Assembly: GRCh37/hg19
Gene Symbol Entrez Gene Chromosome Start End Description ABCG2 9429 4 89011416 89152474 ATP-binding cassette, sub-family G (WHITE), member 2 (Junior blood group) ABLIM2 84448 4 7967039 8160559 actin binding LIM protein family, member 2 ACOX3 8310 4 8368009 8442450 acyl-CoA oxidase 3, pristanoyl ADD1 118 4 2845584 2931803 adducin 1 (alpha) ADRA2C 152 4 3768075 3770251 adrenoceptor alpha 2C AFAP1 60312 4 7760441 7941653 actin filament associated protein 1 AFF1 4299 4 87856154 88062206 AF4/FMR2 family, member 1 ARAP2 116984 4 35949843 36246131 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 C15orf41 84529 15 36871812 37102449 chromosome 15 open reading frame 41 C17orf99 100141515 17 76142434 76162258 chromosome 17 open reading frame 99 C18orf54 162681 18 51884287 51911588 chromosome 18 open reading frame 54 C19orf12 83636 19 30191721 30206364 chromosome 19 open reading frame 12 C1orf123 54987 1 53679771 53686289 chromosome 1 open reading frame 123 C1orf127 148345 1 11006528 11042094 chromosome 1 open reading frame 127 C1orf216 127703 1 36179476 36185073 chromosome 1 open reading frame 216 C1orf64 149563 1 16330731 16335302 chromosome 1 open reading frame 64 C1orf87 127795 1 60452941 60539442 chromosome 1 open reading frame 87 C1QTNF7 114905 4 15341442 15447790 C1q and tumor necrosis factor related protein 7 C22orf39 128977 22 19338891 19435755 chromosome 22 open reading frame 39 C4orf19 55286 4 37455563 37625117 chromosome 4 open reading frame 19 C4orf36 132989 4 87797358 87857354 chromosome 4 open reading frame 36 C5orf38 153571 5 2752245 2755508 chromosome 5 open reading frame 38 C6orf118 168090 6 165693153 165723096 chromosome 6 open reading frame 118 C7orf60 154743 7 112459202 112579971 chromosome 7 open reading frame 60 C9orf129 445577 9 96080481 96108696 chromosome 9 open reading frame 129 C9orf66 157983 9 213108 215893 chromosome 9 open reading frame 66 C9orf89 84270 9 95858500 95875565 chromosome 9 open reading frame 89 CC2D2A 57545 4 15471489 15603180 coiled-coil and C2 domain containing 2A CCDC96 257236 4 7042579 7044728 coiled-coil domain containing 96 CD38 952 4 15779898 15854853 CD38 molecule CHRNA9 55584 4 40337346 40357234 cholinergic receptor, nicotinic, alpha 9 (neuronal) CLNK 116449 4 10488019 10686489 cytokine-dependent hematopoietic cell linker CLRN2 645104 4 17516788 17528727 clarin 2 CPEB2 132864 4 15004298 15071777 cytoplasmic polyadenylation element binding protein 2 CPZ 8532 4 8594387 8621488 carboxypeptidase Z CRMP1 1400 4 5749811 5894785 collapsin response mediator protein 1 CTBP1 1487 4 1205236 1243741 C-terminal binding protein 1 CYTL1 54360 4 5016313 5021199 cytokine-like 1 DCAF16 54876 4 17802278 17812381 DDB1 and CUL4 associated factor 16 DEFB131 644414 4 9446260 9452240 defensin, beta 131 DOK7 285489 4 3465033 3503200 docking protein 7 DRD5 1816 4 9783258 9785632 dopamine receptor D5 DTHD1 401124 4 36283244 36347378 death domain containing 1 EVC 2121 4 5712924 5830772 Ellis van Creveld syndrome EVC2 132884 4 5544499 5711275 Ellis van Creveld syndrome 2 FAM13A 10144 4 89647106 90032549 family with sequence similarity 13, member A FAM184B 27146 4 17630929 17783135 family with sequence similarity 184, member B FAM193A 8603 4 2626988 2734292 family with sequence similarity 193, member A FAM200B 285550 4 15683285 15707188 family with sequence similarity 200, member B FAM53A 152877 4 1619642 1686029 family with sequence similarity 53, member A FBXL5 26234 4 15606162 15683302 F-box and leucine-rich repeat protein 5 FGFBP1 9982 4 15937192 15940363 fibroblast growth factor binding protein 1 FGFBP2 83888 4 15961866 15970932 fibroblast growth factor binding protein 2 FGFRL1 53834 4 1003724 1020685 fibroblast growth factor receptor-like 1 GAK 2580 4 843064 926161 cyclin G associated kinase GALNT7 51809 4 174089904 174245118 polypeptide N-acetylgalactosaminyltransferase 7 GALNTL6 442117 4 172733405 173962710 polypeptide N-acetylgalactosaminyltransferase-like 6 GPR78 27201 4 8560452 8621486 G protein-coupled receptor 78 GPRIN3 285513 4 90157537 90229161 GPRIN family member 3 GRK4 2868 4 2965335 3042474 G protein-coupled receptor kinase 4 GRPEL1 80273 4 7060633 7069924 GrpE-like 1, mitochondrial (E. coli) HAUS3 79441 4 2229191 2243891 HAUS augmin-like complex, subunit 3 HERC3 8916 4 89442199 89629693 HECT and RLD domain containing E3 ubiquitin protein ligase 3 HERC5 51191 4 89378268 89427314 HECT and RLD domain containing E3 ubiquitin protein ligase 5 HERC6 55008 4 89299891 89364263 HECT and RLD domain containing E3 ubiquitin protein ligase family member 6 HGFAC 3083 4 3443614 3451211 HGF activator HMGB2 3148 4 174252846 174256276 high mobility group box 2 HMX1 3166 4 8847802 8873543 H6 family homeobox 1 HTRA3 94031 4 8271492 8308838 HtrA serine peptidase 3 HTT 3064 4 3076408 3245676 huntingtin JAKMIP1 152789 4 6027926 6202318 janus kinase and microtubule interacting protein 1 KIAA0232 9778 4 6783102 6885897 KIAA0232 KLHL8 57563 4 88081255 88161466 kelch-like family member 8 LAP3 51056 4 17578815 17609595 leucine aminopeptidase 3 LCORL 254251 4 17842822 18023499 ligand dependent nuclear receptor corepressor-like LDB2 9079 4 16503164 16900432 LIM domain binding 2 LYAR 55646 4 4269428 4291896 Ly1 antibody reactive MAN2B2 23324 4 6576902 6625089 mannosidase, alpha, class 2B, member 2 MEPE 56955 4 88742563 88767969 matrix extracellular phosphoglycoprotein MFSD10 10227 4 2932288 2936586 major facilitator superfamily domain containing 10 MRFAP1 93621 4 6641818 6644472 Morf4 family associated protein 1 MRFAP1L1 114932 4 6709428 6711607 Morf4 family associated protein 1-like 1 MXD4 10608 4 2249159 2264021 MAX dimerization protein 4 N4BP2 55728 4 40058446 40159872 NEDD4 binding protein 2 NAP1L5 266812 4 89617066 89619386 nucleosome assembly protein 1-like 5 NCAPG 64151 4 17812525 17846485 non-SMC condensin I complex, subunit G NOP14 8602 4 2939660 2965112 NOP14 nucleolar protein NR3C2 4306 4 148999913 149365850 nuclear receptor subfamily 3, group C, member 2 OTOP1 133060 4 4190530 4228616 otopetrin 1 PDS5A 23244 4 39824483 39979576 PDS5 cohesin associated factor A PIGG 54872 4 492989 533985 phosphatidylinositol glycan anchor biosynthesis, class G PIGY 84992 4 89442724 89442940 phosphatidylinositol glycan anchor biosynthesis, class Y PKD2 5311 4 88928820 88998929 polycystic kidney disease 2 (autosomal dominant) POLN 353497 4 2073645 2243848 polymerase (DNA directed) nu PPM1K 152926 4 89178772 89205921 protein phosphatase, Mg2+/Mn2+ dependent, 1K PPP2R2C 5522 4 6322305 6565327 protein phosphatase 2, regulatory subunit B, gamma PROM1 8842 4 15964699 16086001 prominin 1 PTPN13 5783 4 87515468 87736324 protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase) RELL1 768211 4 37592422 37687998 RELT-like 1 RGS12 6002 4 3294755 3441640 regulator of G-protein signaling 12 RHOH 399 4 40192673 40248587 ras homolog family member H RNF212 285498 4 1050038 1107350 ring finger protein 212 RNF4 6047 4 2463947 2627047 ring finger protein 4 SAP30 8819 4 174291120 174298683 Sin3A-associated protein, 30kDa SCRG1 11341 4 174305852 174327531 stimulator of chondrogenesis 1 SEL1L3 23231 4 25749055 25865382 sel-1 suppressor of lin-12-like 3 (C. elegans) SH3BP2 6452 4 2794750 2842825 SH3-domain binding protein 2 SH3TC1 54436 4 8183799 8243530 SH3 domain and tetratricopeptide repeats 1 SLBP 7884 4 1694527 1714282 stem-loop binding protein SLC10A6 345274 4 87744621 87770416 solute carrier family 10 (sodium/bile acid cotransporter), member 6 SLC2A9 56606 4 9772777 10056560 solute carrier family 2 (facilitated glucose transporter), member 9 SLC34A2 10568 4 25656923 25680370 solute carrier family 34 (type II sodium/phosphate cotransporter), member 2 SNCA 6622 4 90645250 90759466 synuclein, alpha (non A4 component of amyloid precursor) SORCS2 57537 4 7194265 7744554 sortilin-related VPS10 domain containing receptor 2 SPP1 6696 4 88896819 88904562 secreted phosphoprotein 1 STK32B 55351 4 5053169 5502725 serine/threonine kinase 32B STX18 53407 4 4417469 4544073 syntaxin 18 TACC3 10460 4 1723227 1746898 transforming, acidic coiled-coil containing protein 3 TADA2B 93624 4 7043626 7059679 transcriptional adaptor 2B TAPT1 202018 4 16162128 16229033 transmembrane anterior posterior transformation 1 TBC1D14 57533 4 6910969 7034845 TBC1 domain family, member 14 TIGD2 166815 4 90033968 90036050 tigger transposable element derived 2 TMEM128 85013 4 4237269 4249950 transmembrane protein 128 TMEM129 92305 4 1717679 1723085 transmembrane protein 129, E3 ubiquitin protein ligase TNIP2 79155 4 2743375 2758103 TNFAIP3 interacting protein 2 TRIML1 339976 4 189060573 189068897 tripartite motif family-like 1 TRIML2 205860 4 189012427 189030757 tripartite motif family-like 2 UBE2K 3093 4 39699664 39784412 ubiquitin-conjugating enzyme E2K UGT2A3 79799 4 69794181 69817509 UDP glucuronosyltransferase 2 family, polypeptide A3 UGT2B10 7365 4 69681711 69696914 UDP glucuronosyltransferase 2 family, polypeptide B10 UGT2B15 7366 4 69512348 69536346 UDP glucuronosyltransferase 2 family, polypeptide B15 UGT2B17 7367 4 69402902 69434245 UDP glucuronosyltransferase 2 family, polypeptide B17 WDR1 9948 4 10075963 10118573 WD repeat domain 1 WFS1 7466 4 6271576 6304992 Wolfram syndrome 1 (wolframin) ZBTB49 166793 4 4291924 4323513 zinc finger and BTB domain containing 49 ZFYVE28 57732 4 2271309 2420390 zinc finger, FYVE domain containing 28 ZNF141 7700 4 331603 378653 zinc finger protein 141 ZNF518B 85460 4 10441498 10459034 zinc finger protein 518B ZNF595 152687 4 53179 88099 zinc finger protein 595 ZNF718 255403 4 124386 157779 zinc finger protein 718 ZNF721 170960 4 419604 492945 zinc finger protein 721 ZNF732 654254 4 264464 299110 zinc finger protein 732 top

© 2015 Cai Laboratory.  Last updated on 13 Mar 2018