ChromothripsisDB: a curated database of chromothripsis
 
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  Fusion Gene
  PubMed ID: 21892161 Case ID: CRC-3 Disease: Colorectal cancer Genome Assembly: GRCh37/hg19
Gene Symbol 1 Chromosome1 Description 1 Gene Symbol 2 Chromosome2 Description 2
ARL8B 3 ADP-ribosylation factor-like 8B GRM7 3 glutamate receptor, metabotropic 7
B3GALNT2 1 beta-1,3-N-acetylgalactosaminyltransferase 2 GRM7 3 glutamate receptor, metabotropic 7
BRPF3 6 bromodomain and PHD finger containing, 3 C6orf223 6 chromosome 6 open reading frame 223
BYSL 6 bystin-like SOBP 6 sine oculis binding protein homolog (Drosophila)
CNTN4 3 contactin 4 GRM7 3 glutamate receptor, metabotropic 7
EYS 6 eyes shut homolog (Drosophila) PDSS2 6 prenyl (decaprenyl) diphosphate synthase, subunit 2
GRM7 3 glutamate receptor, metabotropic 7 RUFY1 5 RUN and FYVE domain containing 1
ITPKB 1 inositol-trisphosphate 3-kinase B GNG4 1 guanine nucleotide binding protein (G protein), gamma 4
ITPR1 3 inositol 1,4,5-trisphosphate receptor, type 1 GRM7 3 glutamate receptor, metabotropic 7
KIF6 6 kinesin family member 6 PDSS2 6 prenyl (decaprenyl) diphosphate synthase, subunit 2
MED20 6 mediator complex subunit 20 PKHD1 6 polycystic kidney and hepatic disease 1 (autosomal recessive)
PKHD1 6 polycystic kidney and hepatic disease 1 (autosomal recessive) TMEM14A 6 transmembrane protein 14A
RYR2 1 ryanodine receptor 2 (cardiac) GRM7 3 glutamate receptor, metabotropic 7
SCGN 6 secretagogin, EF-hand calcium binding protein CLIC5 6 chloride intracellular channel 5
TRERF1 6 transcriptional regulating factor 1 EYS 6 eyes shut homolog (Drosophila)
 
 
  Affected Gene
  PubMed ID: 21892161 Case ID: CRC-3 Disease: Colorectal cancer Genome Assembly: GRCh37/hg19
Gene Symbol Entrez Gene Chromosome Start End Description
AGBL4 84871 1 48998527 50489585 ATP/GTP binding protein-like 4
AIM1 202 6 106959730 107018326 absent in melanoma 1
ANKS1A 23294 6 34857042 35059179 ankyrin repeat and sterile alpha motif domain containing 1A
ARL8B 55207 3 5163905 5222596 ADP-ribosylation factor-like 8B
ASB3 51130 2 53897430 54087297 ankyrin repeat and SOCS box containing 3
ATG5 9474 6 106632351 106773666 autophagy related 5
B3GALNT2 148789 1 235613238 235667781 beta-1,3-N-acetylgalactosaminyltransferase 2
BRPF3 27154 6 36164521 36200567 bromodomain and PHD finger containing, 3
BYSL 705 6 41888926 41900784 bystin-like
C1orf127 148345 1 11006528 11042094 chromosome 1 open reading frame 127
C6orf132 647024 6 42068856 42110357 chromosome 6 open reading frame 132
C6orf223 221416 6 43968317 43973695 chromosome 6 open reading frame 223
CASZ1 54897 1 10696661 10856707 castor zinc finger 1
CDC5L 988 6 44355262 44418163 cell division cycle 5-like
CLIC5 53405 6 45868045 46048132 chloride intracellular channel 5
CNST 163882 1 246729746 246831886 consortin, connexin sorting protein
CNTN4 152330 3 2140497 3099645 contactin 4
COL12A1 1303 6 75794042 75915767 collagen, type XII, alpha 1
CRBN 51185 3 3190676 3221394 cereblon
DAAM2 23500 6 39760142 39872648 dishevelled associated activator of morphogenesis 2
EDEM1 9695 3 5229331 5261642 ER degradation enhancer, mannosidase alpha-like 1
EYS 346007 6 64429876 66417118 eyes shut homolog (Drosophila)
FHIT 2272 3 59735036 61237133 fragile histidine triad
GCLC 2729 6 53362139 53481768 glutamate-cysteine ligase, catalytic subunit
GNG4 2786 1 235710987 235814054 guanine nucleotide binding protein (G protein), gamma 4
GRM7 2917 3 6811688 7783215 glutamate receptor, metabotropic 7
GUCA1B 2979 6 42152139 42162654 guanylate cyclase activator 1B (retina)
HACE1 57531 6 105175968 105307794 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1
HIST1H2AK 8330 6 27805658 27806117 histone cluster 1, H2ak
HIST1H2BL 8340 6 27775257 27775709 histone cluster 1, H2bl
HIST1H4H 8365 6 26281283 26285762 histone cluster 1, H4h
HMGCLL1 54511 6 55299167 55444012 3-hydroxymethyl-3-methylglutaryl-CoA lyase-like 1
ITPKB 3707 1 226819391 226927024 inositol-trisphosphate 3-kinase B
ITPR1 3708 3 4535032 4889524 inositol 1,4,5-trisphosphate receptor, type 1
KHDRBS2 202559 6 62389865 62996132 KH domain containing, RNA binding, signal transduction associated 2
KIF6 221458 6 39297766 39693181 kinesin family member 6
LMCD1 29995 3 8543393 8609805 LIM and cysteine-rich domains 1
LRRC1 55227 6 53659295 53788919 leucine rich repeat containing 1
LRRN1 57633 3 3841121 3889387 leucine rich repeat neuronal 1
LYST 1130 1 235824341 236046940 lysosomal trafficking regulator
MED20 9477 6 41873092 41888877 mediator complex subunit 20
MOCS1 4337 6 39867354 39902290 molybdenum cofactor synthesis 1
MRPS18A 55168 6 43639040 43655528 mitochondrial ribosomal protein S18A
MUT 4594 6 49398073 49430904 methylmalonyl CoA mutase
NCR2 9436 6 41303393 41318625 natural cytotoxicity triggering receptor 2
NPHP4 261734 1 5922871 6052533 nephronophthisis 4
PACSIN1 29993 6 34433916 34503006 protein kinase C and casein kinase substrate in neurons 1
PDSS2 57107 6 107473761 107780768 prenyl (decaprenyl) diphosphate synthase, subunit 2
PGK2 5232 6 49753366 49755053 phosphoglycerate kinase 2
PKHD1 5314 6 51480098 51952423 polycystic kidney and hepatic disease 1 (autosomal recessive)
PLD5 200150 1 242246288 242687998 phospholipase D family, member 5
PRDM1 639 6 106534195 106557814 PR domain containing 1, with ZNF domain
PRSS16 10279 6 27215480 27224403 protease, serine, 16 (thymus)
QRSL1 55278 6 107077453 107116292 glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1
RSPO3 84870 6 127439749 127518910 R-spondin 3
RTN4IP1 84816 6 107018903 107077373 reticulon 4 interacting protein 1
RYR2 6262 1 237205505 237997288 ryanodine receptor 2 (cardiac)
SCGN 10590 6 25652464 25702011 secretagogin, EF-hand calcium binding protein
SCML4 256380 6 108025308 108145521 sex comb on midleg-like 4 (Drosophila)
SLC6A1 6529 3 11034410 11080933 solute carrier family 6 (neurotransmitter transporter), member 1
SLC6A11 6538 3 10857885 10982419 solute carrier family 6 (neurotransmitter transporter), member 11
SOBP 55084 6 107811162 107981357 sine oculis binding protein homolog (Drosophila)
TAF8 129685 6 42018251 42055199 TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa
TBCE 6905 1 235530675 235612283 tubulin folding cofactor E
TFAP2D 83741 6 50681541 50740701 transcription factor AP-2 delta (activating enhancer binding protein 2 delta)
TFEB 7942 6 41651716 41703997 transcription factor EB
TINAG 27283 6 54172657 54254950 tubulointerstitial nephritis antigen
TMEM14A 28978 6 52535907 52551386 transmembrane protein 14A
TRERF1 55809 6 42192669 42419789 transcriptional regulating factor 1
TRNT1 51095 3 3168600 3192563 tRNA nucleotidyl transferase, CCA-adding, 1
UNC5CL 222643 6 40994772 41006928 unc-5 homolog C (C. elegans)-like
VN1R5 317705 1 247419374 247420445 vomeronasal 1 receptor 5 (gene/pseudogene)
ZFAND3 60685 6 37787275 38122400 zinc finger, AN1-type domain 3
ZNF124 7678 1 247285277 247335318 zinc finger protein 124
ZNF669 79862 1 247263264 247267674 zinc finger protein 669
ZNF670 93474 1 247108849 247242113 zinc finger protein 670
ZP4 57829 1 238045705 238054094 zona pellucida glycoprotein 4
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© 2015 Cai Laboratory.  Last updated on 13 Mar 2018