ChromothripsisDB: a curated database of chromothripsis
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	Fusion Gene
	PubMed ID: 24819516	Case ID: UKT	Disease: Hepatocellular carcinoma	Genome Assembly: GRCh37/hg19
Gene Symbol 1 Chromosome1 Description 1 Gene Symbol 2 Chromosome2 Description 2

	Affected Gene
	PubMed ID: 24819516	Case ID: UKT	Disease: Hepatocellular carcinoma	Genome Assembly: GRCh37/hg19
Gene Symbol Entrez Gene Chromosome Start End Description ADAD1 132612 4 123300121 123350957 adenosine deaminase domain containing 1 (testis-specific) ADH1A 124 4 100197524 100212185 alcohol dehydrogenase 1A (class I), alpha polypeptide ADH1B 125 4 100226121 100242558 alcohol dehydrogenase 1B (class I), beta polypeptide ADH1C 126 4 100257649 100274184 alcohol dehydrogenase 1C (class I), gamma polypeptide ADH4 127 4 100044808 100078949 alcohol dehydrogenase 4 (class II), pi polypeptide ADH5 128 4 99992132 100009952 alcohol dehydrogenase 5 (class III), chi polypeptide ADH6 130 4 100123795 100140694 alcohol dehydrogenase 6 (class V) ADH7 131 4 100333418 100356894 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide AGA 175 4 178351924 178363657 aspartylglucosaminidase AIMP1 9255 4 107236701 107270383 aminoacyl tRNA synthetase complex-interacting multifunctional protein 1 ALPK1 80216 4 113206665 113363776 alpha-kinase 1 ANKRD50 57182 4 125585207 125633887 ankyrin repeat domain 50 ANXA5 308 4 122589110 122618268 annexin A5 AP1AR 55435 4 113152893 113191203 adaptor-related protein complex 1 associated regulatory protein ARAP2 116984 4 35949843 36246131 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 ARHGEF38 54848 4 106473777 106629250 Rho guanine nucleotide exchange factor (GEF) 38 ARSJ 79642 4 114821440 114900883 arylsulfatase family, member J ASCC3 10973 6 100956070 101329248 activating signal cointegrator 1 complex subunit 3 ATOH1 474 4 94750042 94751221 atonal homolog 1 (Drosophila) BANK1 55024 4 102332443 102995969 B-cell scaffold protein with ankyrin repeats 1 BBS12 166379 4 123653857 123666098 Bardet-Biedl syndrome 12 BBS7 55212 4 122745595 122791652 Bardet-Biedl syndrome 7 BDH2 56898 4 104000592 104021040 3-hydroxybutyrate dehydrogenase, type 2 BMPR1B 658 4 95679119 96079599 bone morphogenetic protein receptor, type IB C4orf17 84103 4 100432161 100463460 chromosome 4 open reading frame 17 C4orf29 80167 4 128886461 128960866 chromosome 4 open reading frame 29 C4orf3 401152 4 120218207 120225600 chromosome 4 open reading frame 3 C4orf32 132720 4 113066553 113116412 chromosome 4 open reading frame 32 C4orf33 132321 4 130014472 130037795 chromosome 4 open reading frame 33 CAMK2D 817 4 114372188 114683083 calcium/calmodulin-dependent protein kinase II delta CASP6 839 4 110609785 110624739 caspase 6, apoptosis-related cysteine peptidase CCDC109B 55013 4 110481361 110609874 coiled-coil domain containing 109B CCNA2 890 4 122737599 122745087 cyclin A2 CCNC 892 6 99990256 100016849 cyclin C CENPE 1062 4 104026963 104119566 centromere protein E, 312kDa CFI 3426 4 110661852 110723335 complement factor I CISD2 493856 4 103790135 103810399 CDGSH iron sulfur domain 2 CLVS2 134829 6 123317116 123394072 clavesin 2 COL25A1 84570 4 109731877 110223813 collagen, type XXV, alpha 1 COQ3 51805 6 99817276 99842080 coenzyme Q3 methyltransferase COX7B2 170712 4 46736844 46911252 cytochrome c oxidase subunit VIIb2 CXXC4 80319 4 105389469 105416058 CXXC finger protein 4 CYP2U1 113612 4 108852525 108874613 cytochrome P450, family 2, subfamily U, polypeptide 1 DAPP1 27071 4 100737990 100791311 dual adaptor of phosphotyrosine and 3-phosphoinositides DDIT4L 115265 4 101107027 101111939 DNA-damage-inducible transcript 4-like DKK2 27123 4 107842959 108204963 dickkopf WNT signaling pathway inhibitor 2 DNAJB14 79982 4 100817405 100867883 DnaJ (Hsp40) homolog, subfamily B, member 14 EEF1E1 9521 6 8073593 8102811 eukaryotic translation elongation factor 1 epsilon 1 EGF 1950 4 110834040 110933422 epidermal growth factor EIF4E 1977 4 99792835 99851788 eukaryotic translation initiation factor 4E ELMOD2 255520 4 141445312 141474924 ELMO/CED-12 domain containing 2 ELOVL6 79071 4 110967002 111120355 ELOVL fatty acid elongase 6 EMCN 51705 4 101316498 101801283 endomucin ENPEP 2028 4 111286889 111486441 glutamyl aminopeptidase (aminopeptidase A) EPHA5 2044 4 66185281 66536213 EPH receptor A5 EPHA7 2045 6 93949738 94129265 EPH receptor A7 EXOSC9 5393 4 122722472 122738176 exosome component 9 FABP2 2169 4 120238405 120243545 fatty acid binding protein 2, intestinal FABP7 2173 6 123100620 123105219 fatty acid binding protein 7, brain FAT4 79633 4 126237554 126414087 FAT atypical cadherin 4 FBXL4 26235 6 99316420 99395849 F-box and leucine-rich repeat protein 4 FGF2 2247 4 123747863 123819391 fibroblast growth factor 2 (basic) FHL5 9457 6 97010424 97064512 four and a half LIM domains 5 FUT9 10690 6 96463860 96663488 fucosyltransferase 9 (alpha (1,3) fucosyltransferase) GABRA2 2555 4 46250444 46477247 gamma-aminobutyric acid (GABA) A receptor, alpha 2 GABRA4 2557 4 46920917 46996424 gamma-aminobutyric acid (GABA) A receptor, alpha 4 GABRG1 2565 4 46037786 46126098 gamma-aminobutyric acid (GABA) A receptor, gamma 1 GAR1 54433 4 110736666 110745893 GAR1 ribonucleoprotein GJA1 2697 6 121756838 121770873 gap junction protein, alpha 1, 43kDa GNPDA2 132789 4 44684217 44728612 glucosamine-6-phosphate deaminase 2 GNRHR 2798 4 68605046 68620078 gonadotropin-releasing hormone receptor GPR63 81491 6 97242002 97285353 G protein-coupled receptor 63 GRID2 2895 4 93225550 94695707 glutamate receptor, ionotropic, delta 2 GRIK2 2898 6 101846664 102517958 glutamate receptor, ionotropic, kainate 2 GSTCD 79807 4 106629935 106768885 glutathione S-transferase, C-terminal domain containing GUF1 60558 4 44680444 44702943 GUF1 GTPase homolog (S. cerevisiae) H2AFZ 3015 4 100869243 100871545 H2A histone family, member Z HADH 3033 4 108910870 108956331 hydroxyacyl-CoA dehydrogenase HPGDS 27306 4 95219686 95264027 hematopoietic prostaglandin D synthase HSF2 3298 6 122720691 122754264 heat shock transcription factor 2 HSPA4L 22824 4 128702976 128761888 heat shock 70kDa protein 4-like IL15 3600 4 142557752 142655140 interleukin 15 IL2 3558 4 123372625 123377880 interleukin 2 IL21 59067 4 123533783 123542224 interleukin 21 INPP4B 8821 4 142944313 143768585 inositol polyphosphate-4-phosphatase, type II, 105kDa INTS12 57117 4 106603784 106817143 integrator complex subunit 12 INTU 27152 4 128544426 128647892 inturned planar cell polarity protein KCTD8 386617 4 44175926 44450824 potassium channel tetramerization domain containing 8 KHDRBS2 202559 6 62389865 62996132 KH domain containing, RNA binding, signal transduction associated 2 KIAA1109 84162 4 123073488 123283913 KIAA1109 KLHL32 114792 6 97372605 97588630 kelch-like family member 32 LAMTOR3 8649 4 100799493 100815647 late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 LARP1B 55132 4 128982423 129144086 La ribonucleoprotein domain family, member 1B LARP7 51574 4 113558120 113578748 La ribonucleoprotein domain family, member 7 LEF1 51176 4 108968701 109090112 lymphoid enhancer-binding factor 1 LGSN 51557 6 63985856 64029882 lengsin, lens protein with glutamine synthetase domain LPHN3 23284 4 62066976 62944053 latrophilin 3 LRIT3 345193 4 110769358 110793471 leucine-rich repeat, immunoglobulin-like and transmembrane domains 3 MAD2L1 4085 4 120976763 120988229 MAD2 mitotic arrest deficient-like 1 (yeast) MANBA 4126 4 103552660 103682151 mannosidase, beta A, lysosomal MANEA 79694 6 96025419 96057333 mannosidase, endo-alpha MAP3K7 6885 6 91223292 91296764 mitogen-activated protein kinase kinase kinase 7 MCHR2 84539 6 100367786 100442123 melanin-concentrating hormone receptor 2 METAP1 23173 4 99916771 99983964 methionyl aminopeptidase 1 METTL14 57721 4 119606523 119636588 methyltransferase like 14 MFSD8 256471 4 128838960 128887150 major facilitator superfamily domain containing 8 MMS22L 253714 6 97590037 97731093 MMS22-like, DNA repair protein MTTP 4547 4 100484918 100545156 microsomal triglyceride transfer protein MYOZ2 51778 4 120056939 120108944 myozenin 2 NDNF 79625 4 121956768 121994176 neuron-derived neurotrophic factor NDST3 9348 4 118954773 119179803 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3 NDST4 64579 4 115748919 116035032 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4 NDUFAF4 29078 6 97337189 97345757 NADH dehydrogenase (ubiquinone) complex I, assembly factor 4 NEIL3 55247 4 178230990 178284097 nei endonuclease VIII-like 3 (E. coli) NEUROG2 63973 4 113434672 113437328 neurogenin 2 NFKB1 4790 4 103422486 103538459 nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 NPNT 255743 4 106815932 106925184 nephronectin NUDT6 11162 4 123809852 123844123 nudix (nucleoside diphosphate linked moiety X)-type motif 6 OSTC 58505 4 109571740 109588976 oligosaccharyltransferase complex subunit (non-catalytic) PABPC4L 132430 4 135117488 135122903 poly(A) binding protein, cytoplasmic 4-like PAPSS1 9061 4 108511433 108641608 3'-phosphoadenosine 5'-phosphosulfate synthase 1 PCDH10 57575 4 134070470 134129356 protocadherin 10 PCDH18 54510 4 138440072 138453648 protocadherin 18 PCDH7 5099 4 30722037 31148422 protocadherin 7 PDE5A 8654 4 120415550 120550146 phosphodiesterase 5A, cGMP-specific PDHA2 5161 4 96761239 96762625 pyruvate dehydrogenase (lipoamide) alpha 2 PDLIM5 10611 4 95373037 95589377 PDZ and LIM domain 5 PGRMC2 10424 4 129190397 129209984 progesterone receptor membrane component 2 PHF3 23469 6 64345725 64489229 PHD finger protein 3 PITX2 5308 4 111538579 111563279 paired-like homeodomain 2 PKIB 5570 6 122793076 123047518 protein kinase (cAMP-dependent, catalytic) inhibitor beta PLA2G12A 81579 4 110631145 110651233 phospholipase A2, group XIIA PLK4 10733 4 128802016 128820350 polo-like kinase 4 PNISR 25957 6 99845927 99873207 PNN-interacting serine/arginine-rich protein POU3F2 5454 6 99282580 99286660 POU class 3 homeobox 2 PPA2 27068 4 106290234 106395238 pyrophosphatase (inorganic) 2 PPP3CA 5530 4 101944566 102269435 protein phosphatase 3, catalytic subunit, alpha isozyme PRDM13 59336 6 100054606 100063454 PR domain containing 13 PRDM5 11107 4 121606074 121844025 PR domain containing 5 PRSS12 8492 4 119201193 119274158 protease, serine, 12 (neurotrypsin, motopsin) PTP4A1 7803 6 64231666 64293492 protein tyrosine phosphatase type IVA, member 1 QRFPR 84109 4 122250467 122302214 pyroglutamylated RFamide peptide receptor RAP1GDS1 5910 4 99182535 99365012 RAP1, GTP-GDP dissociation stimulator 1 RNF150 57484 4 141780961 142134031 ring finger protein 150 RPL34 6164 4 109541722 109551568 ribosomal protein L34 RRH 10692 4 110749150 110765760 retinal pigment epithelium-derived rhodopsin homolog SCLT1 132320 4 129786076 130014764 sodium channel and clathrin linker 1 SEC24B 10427 4 110354928 110462052 SEC24 family member B SEC24D 9871 4 119643978 119759838 SEC24 family member D SERINC1 57515 6 122764499 122792967 serine incorporator 1 SGMS2 166929 4 108745719 108836203 sphingomyelin synthase 2 SIM1 6492 6 100832891 100912805 single-minded family bHLH transcription factor 1 SLC25A31 83447 4 128651533 128695448 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31 SLC35B3 51000 6 8413301 8435794 solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B3 SLC39A8 64116 4 103172198 103352415 solute carrier family 39 (zinc transporter), member 8 SLC9B1 150159 4 103806205 103940896 solute carrier family 9, subfamily B (NHA1, cation proton antiporter 1), member 1 SLC9B2 133308 4 103941025 104006986 solute carrier family 9, subfamily B (NHA2, cation proton antiporter 2), member 2 SMARCAD1 56916 4 95128762 95212443 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 SMPDL3A 10924 6 123110315 123130865 sphingomyelin phosphodiesterase, acid-like 3A SPATA5 166378 4 123844229 124240605 spermatogenesis associated 5 SPRY1 10252 4 124317950 124324910 sprouty homolog 1, antagonist of FGF signaling (Drosophila) STAP1 26228 4 68424446 68473055 signal transducing adaptor family member 1 SYNPO2 171024 4 119809996 119982402 synaptopodin 2 TACR3 6870 4 104507188 104640973 tachykinin receptor 3 TBC1D9 23158 4 141541919 141677274 TBC1 domain family, member 9 (with GRAM domain) TBCK 93627 4 106962756 107242652 TBC1 domain containing kinase TECRL 253017 4 65140975 65275186 trans-2,3-enoyl-CoA reductase-like TET2 54790 4 106067032 106200973 tet methylcytosine dioxygenase 2 TMEM155 132332 4 122680088 122686582 transmembrane protein 155 TMPRSS11A 339967 4 68775103 68829858 transmembrane protease, serine 11A TMPRSS11B 132724 4 69092371 69111438 transmembrane protease, serine 11B TMPRSS11D 9407 4 68686594 68749750 transmembrane protease, serine 11D TMPRSS11F 389208 4 68918916 68995598 transmembrane protease, serine 11F TNIP3 79931 4 122052563 122148621 TNFAIP3 interacting protein 3 TRAM1L1 133022 4 118004718 118006736 translocation associated membrane protein 1-like 1 TRDN 10345 6 123537483 123958238 triadin TRPC3 7222 4 122800182 122872909 transient receptor potential cation channel, subfamily C, member 3 TSPAN5 10098 4 99391518 99579780 tetraspanin 5 UBA6 55236 4 68478370 68566897 ubiquitin-like modifier activating enzyme 6 UBE2D3 7323 4 103715540 103790053 ubiquitin-conjugating enzyme E2D 3 UCP1 7350 4 141480588 141489959 uncoupling protein 1 (mitochondrial, proton carrier) UFL1 23376 6 96969471 97003152 UFM1-specific ligase 1 UGT2A1 10941 4 70454135 70518965 UDP glucuronosyltransferase 2 family, polypeptide A1, complex locus UGT2A3 79799 4 69794181 69817509 UDP glucuronosyltransferase 2 family, polypeptide A3 UGT2B15 7366 4 69512348 69536346 UDP glucuronosyltransferase 2 family, polypeptide B15 UGT2B17 7367 4 69402902 69434245 UDP glucuronosyltransferase 2 family, polypeptide B17 UGT2B4 7363 4 70345883 70391732 UDP glucuronosyltransferase 2 family, polypeptide B4 UGT2B7 7364 4 69917081 69978705 UDP glucuronosyltransferase 2 family, polypeptide B7 UGT8 7368 4 115519611 115599380 UDP glycosyltransferase 8 UNC5C 8633 4 96083655 96470357 unc-5 homolog C (C. elegans) USP45 85015 6 99880190 99969604 ubiquitin specific peptidase 45 USP53 54532 4 120133742 120216672 ubiquitin specific peptidase 53 VEGFC 7424 4 177604689 177713881 vascular endothelial growth factor C YIPF7 285525 4 44624086 44680573 Yip1 domain family, member 7 YTHDC1 91746 4 69176105 69215807 YTH domain containing 1 ZNF330 27309 4 142142041 142155851 zinc finger protein 330 top

Chromothripsis database. 2025 Cai Laboratory