ChromothripsisDB: a curated database of chromothripsis
 
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  Fusion Gene
  PubMed ID: 22622578 Case ID: ME035 Disease: Melanoma Genome Assembly: GRCh37/hg19
Gene Symbol 1 Chromosome1 Description 1 Gene Symbol 2 Chromosome2 Description 2
BID 22 BH3 interacting domain death agonist TBX1 22 T-box 1
CACNA1I 22 calcium channel, voltage-dependent, T type, alpha 1I subunit SHANK3 22 SH3 and multiple ankyrin repeat domains 3
CDH12 5 cadherin 12, type 2 (N-cadherin 2) HMGXB4 22 HMG box domain containing 4
CDH12 5 cadherin 12, type 2 (N-cadherin 2) SLC1A3 5 solute carrier family 1 (glial high affinity glutamate transporter), member 3
CDH6 5 cadherin 6, type 2, K-cadherin (fetal kidney) MED15 22 mediator complex subunit 15
CDH9 5 cadherin 9, type 2 (T1-cadherin) EGFLAM 5 EGF-like, fibronectin type III and laminin G domains
EGFLAM 5 EGF-like, fibronectin type III and laminin G domains BCL2L13 22 BCL2-like 13 (apoptosis facilitator)
EGFLAM 5 EGF-like, fibronectin type III and laminin G domains LIFR 5 leukemia inhibitory factor receptor alpha
IL17RA 22 interleukin 17 receptor A ENTHD1 22 ENTH domain containing 1
KLHL22 22 kelch-like family member 22 ENTHD1 22 ENTH domain containing 1
KLHL22 22 kelch-like family member 22 NCF4 22 neutrophil cytosolic factor 4, 40kDa
MED15 22 mediator complex subunit 15 ENTHD1 22 ENTH domain containing 1
MICAL3 22 microtubule associated monooxygenase, calponin and LIM domain containing 3 CACNA1I 22 calcium channel, voltage-dependent, T type, alpha 1I subunit
MICAL3 22 microtubule associated monooxygenase, calponin and LIM domain containing 3 KLHL22 22 kelch-like family member 22
MICAL3 22 microtubule associated monooxygenase, calponin and LIM domain containing 3 ZBED4 22 zinc finger, BED-type containing 4
PDZD2 5 PDZ domain containing 2 LARGE 22 like-glycosyltransferase
PI4KA 22 phosphatidylinositol 4-kinase, catalytic, alpha CACNA1I 22 calcium channel, voltage-dependent, T type, alpha 1I subunit
PPAP2A 5 phosphatidic acid phosphatase type 2A SLC38A9 5 solute carrier family 38, member 9
PRODH 22 proline dehydrogenase (oxidase) 1 MED15 22 mediator complex subunit 15
RICTOR 5 RPTOR independent companion of MTOR, complex 2 GHR 5 growth hormone receptor
SLC12A7 5 solute carrier family 12 (potassium/chloride transporter), member 7 MICAL3 22 microtubule associated monooxygenase, calponin and LIM domain containing 3
TERT 5 telomerase reverse transcriptase ENTHD1 22 ENTH domain containing 1
TOP3B 22 topoisomerase (DNA) III beta CACNG2 22 calcium channel, voltage-dependent, gamma subunit 2
ZNF131 5 zinc finger protein 131 ENTHD1 22 ENTH domain containing 1
 
 
  Affected Gene
  PubMed ID: 22622578 Case ID: ME035 Disease: Melanoma Genome Assembly: GRCh37/hg19
Gene Symbol Entrez Gene Chromosome Start End Description
ADAMTS16 170690 5 5140443 5320417 ADAM metallopeptidase with thrombospondin type 1 motif, 16
ALG12 79087 22 50293877 50312106 ALG12, alpha-1,6-mannosyltransferase
ARL15 54622 5 53179775 53606412 ADP-ribosylation factor-like 15
ASB3 51130 2 53897430 54087297 ankyrin repeat and SOCS box containing 3
ATP6V1E1 529 22 18074902 18111584 ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1
BCL2L13 23786 22 18111621 18213388 BCL2-like 13 (apoptosis facilitator)
BID 637 22 18216906 18257536 BH3 interacting domain death agonist
C5orf22 55322 5 31532373 31555165 chromosome 5 open reading frame 22
C5orf28 64417 5 43444354 43483995 chromosome 5 open reading frame 28
C5orf34 375444 5 43486803 43515247 chromosome 5 open reading frame 34
C5orf38 153571 5 2752245 2755508 chromosome 5 open reading frame 38
C5orf42 65250 5 37106330 37249530 chromosome 5 open reading frame 42
CACNA1I 8911 22 39966758 40085742 calcium channel, voltage-dependent, T type, alpha 1I subunit
CACNG2 10369 22 36959968 37099603 calcium channel, voltage-dependent, gamma subunit 2
CAPSL 133690 5 35904397 35938881 calcyphosine-like
CDH10 1008 5 24487209 24645087 cadherin 10, type 2 (T2-cadherin)
CDH12 1010 5 21750782 22853731 cadherin 12, type 2 (N-cadherin 2)
CDH18 1016 5 19473060 20575982 cadherin 18, type 2
CDH6 1004 5 31193857 31329253 cadherin 6, type 2, K-cadherin (fetal kidney)
CDH9 1007 5 26880709 27121257 cadherin 9, type 2 (T1-cadherin)
CECR1 51816 22 17660194 17702879 cat eye syndrome chromosome region, candidate 1
CECR2 27443 22 17840837 18037850 cat eye syndrome chromosome region, candidate 2
COMT 1312 22 19929130 19957498 catechol-O-methyltransferase
CPT1B 1375 22 51007290 51017899 carnitine palmitoyltransferase 1B (muscle)
CTNND2 1501 5 10971952 11904155 catenin (cadherin-associated protein), delta 2
DNAH5 1767 5 13690440 13944652 dynein, axonemal, heavy chain 5
EGFLAM 133584 5 38258511 38465123 EGF-like, fibronectin type III and laminin G domains
ENTHD1 150350 22 40139049 40289868 ENTH domain containing 1
FAM19A5 25817 22 48885272 49246724 family with sequence similarity 19 (chemokine (C-C motif)-like), member A5
FER 2241 5 108083523 108532542 fer (fps/fes related) tyrosine kinase
FGF10 2255 5 44303646 44389808 fibroblast growth factor 10
GABRG2 2566 5 161494546 161582542 gamma-aminobutyric acid (GABA) A receptor, gamma 2
GDNF 2668 5 37812779 37839788 glial cell derived neurotrophic factor
GHR 2690 5 42423879 42721979 growth hormone receptor
HMGXB4 10042 22 35653445 35691800 HMG box domain containing 4
HSPB3 8988 5 53751445 53752207 heat shock 27kDa protein 3
IL17RA 23765 22 17565844 17596583 interleukin 17 receptor A
IRX1 79192 5 3596168 3601517 iroquois homeobox 1
KCTD17 79734 22 37447779 37459430 potassium channel tetramerization domain containing 17
KLHL22 84861 22 20783528 20850170 kelch-like family member 22
LARGE 9215 22 33558212 34318829 like-glycosyltransferase
LIFR 3977 5 38475065 38608456 leukemia inhibitory factor receptor alpha
MED15 51586 22 20850200 20941919 mediator complex subunit 15
MICAL3 57553 22 18270415 18507325 microtubule associated monooxygenase, calponin and LIM domain containing 3
MPST 4357 22 37415676 37425863 mercaptopyruvate sulfurtransferase
MRPL36 64979 5 1798500 1801480 mitochondrial ribosomal protein L36
MTMR12 54545 5 32227100 32313115 myotubularin related protein 12
NCF4 4689 22 37257030 37274057 neutrophil cytosolic factor 4, 40kDa
NIPBL 25836 5 36876861 37066515 Nipped-B homolog (Drosophila)
NNT 23530 5 43602794 43707507 nicotinamide nucleotide transhydrogenase
OR11H1 81061 22 16448824 16449805 olfactory receptor, family 11, subfamily H, member 1
PAIP1 10605 5 43526369 43557860 poly(A) binding protein interacting protein 1
PCDH1 5097 5 141232938 141258811 protocadherin 1
PDZD2 23037 5 31639517 32111037 PDZ domain containing 2
PI4KA 5297 22 21061979 21213705 phosphatidylinositol 4-kinase, catalytic, alpha
PPAP2A 8611 5 54720682 54830878 phosphatidic acid phosphatase type 2A
PRDM9 56979 5 23507264 23528706 PR domain containing 9
PRODH 5625 22 18900294 18924066 proline dehydrogenase (oxidase) 1
RANBP3L 202151 5 36248536 36302216 RAN binding protein 3-like
RASD2 23551 22 35936915 35950048 RASD family, member 2
RICTOR 253260 5 38938021 39074510 RPTOR independent companion of MTOR, complex 2
SEMA5A 9037 5 9035138 9546187 sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A
SEPP1 6414 5 42799982 42887494 selenoprotein P, plasma, 1
SHANK3 85358 22 51112843 51171726 SH3 and multiple ankyrin repeat domains 3
SLC1A3 6507 5 36606457 36688436 solute carrier family 1 (glial high affinity glutamate transporter), member 3
SLC38A9 153129 5 54921673 55069022 solute carrier family 38, member 9
SLC6A19 340024 5 1201710 1225232 solute carrier family 6 (neutral amino acid transporter), member 19
SPEF2 79925 5 35617946 35814713 sperm flagellar 2
TBX1 6899 22 19744226 19771116 T-box 1
TERT 7015 5 1253262 1295184 telomerase reverse transcriptase
TOP3B 8940 22 22311397 22337213 topoisomerase (DNA) III beta
TXNRD2 10587 22 19863040 19929341 thioredoxin reductase 2
UGT3A1 133688 5 35951112 36001130 UDP glycosyltransferase 3 family, polypeptide A1
VPREB1 7441 22 22599087 22599927 pre-B lymphocyte 1
XKR3 150165 22 17264302 17302589 XK, Kell blood group complex subunit-related family, member 3
ZBED4 9889 22 50247490 50283726 zinc finger, BED-type containing 4
ZDHHC11 79844 5 710471 851101 zinc finger, DHHC-type containing 11
ZFR 51663 5 32354456 32444867 zinc finger RNA binding protein
ZNF131 7690 5 43065278 43192123 zinc finger protein 131
ZNRF3 84133 22 29279580 29453475 zinc and ring finger 3
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Chromothripsis database. 2025 Cai Laboratory