ChromothripsisDB: a curated database of chromothripsis
 
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  Fusion Gene
  PubMed ID: 23622249 Case ID: PR-3042 Disease: Prostate cancer Genome Assembly: GRCh37/hg19
Gene Symbol 1 Chromosome1 Description 1 Gene Symbol 2 Chromosome2 Description 2
TAF1A 1 TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa FAM117B 2 family with sequence similarity 117, member B
THSD7B 2 thrombospondin, type I, domain containing 7B LRP1B 2 low density lipoprotein receptor-related protein 1B
VPS54 2 vacuolar protein sorting 54 homolog (S. cerevisiae) TRAPPC9 8 trafficking protein particle complex 9
LSAMP 3 limbic system-associated membrane protein GSK3B 3 glycogen synthase kinase 3 beta
ROBO1 3 roundabout, axon guidance receptor, homolog 1 (Drosophila) PKIB 6 protein kinase (cAMP-dependent, catalytic) inhibitor beta
ROBO1 3 roundabout, axon guidance receptor, homolog 1 (Drosophila) NKAIN2 6 Na+/K+ transporting ATPase interacting 2
DDX60L 4 DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like GALNTL6 4 polypeptide N-acetylgalactosaminyltransferase-like 6
ANK2 4 ankyrin 2, neuronal CAMK2D 4 calcium/calmodulin-dependent protein kinase II delta
COL25A1 4 collagen, type XXV, alpha 1 ENPEP 4 glutamyl aminopeptidase (aminopeptidase A)
SCLT1 4 sodium channel and clathrin linker 1 CDH12 5 cadherin 12, type 2 (N-cadherin 2)
EGF 4 epidermal growth factor CDH12 5 cadherin 12, type 2 (N-cadherin 2)
NEK1 4 NIMA-related kinase 1 CSTF1 20 cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa
WDR41 5 WD repeat domain 41 ARSB 5 arylsulfatase B
FBXL17 5 F-box and leucine-rich repeat protein 17 TCERG1L 10 transcription elongation regulator 1-like
SNCAIP 5 synuclein, alpha interacting protein PRDM6 5 PR domain containing 6
IQGAP2 5 IQ motif containing GTPase activating protein 2 KIAA0355 19 KIAA0355
NKAIN2 6 Na+/K+ transporting ATPase interacting 2 LAMA2 6 laminin, alpha 2
TRDN 6 triadin PTPRK 6 protein tyrosine phosphatase, receptor type, K
SLC22A3 6 solute carrier family 22 (organic cation transporter), member 3 FGD4 12 FYVE, RhoGEF and PH domain containing 4
AVL9 7 AVL9 homolog (S. cerevisiase) GRB10 7 growth factor receptor-bound protein 10
XKR4 8 XK, Kell blood group complex subunit-related family, member 4 CLVS1 8 clavesin 1
XKR4 8 XK, Kell blood group complex subunit-related family, member 4 CLVS1 8 clavesin 1
XKR4 8 XK, Kell blood group complex subunit-related family, member 4 CYP7B1 8 cytochrome P450, family 7, subfamily B, polypeptide 1
XKR4 8 XK, Kell blood group complex subunit-related family, member 4 NKAIN3 8 Na+/K+ transporting ATPase interacting 3
SGCZ 8 sarcoglycan, zeta PKIA 8 protein kinase (cAMP-dependent, catalytic) inhibitor alpha
HEY1 8 hes-related family bHLH transcription factor with YRPW motif 1 KIRREL3 11 kin of IRRE like 3 (Drosophila)
RAB38 11 RAB38, member RAS oncogene family NAALAD2 11 N-acetylated alpha-linked acidic dipeptidase 2
COG6 13 component of oligomeric golgi complex 6 SLC25A15 13 solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15
DZIP1 13 DAZ interacting zinc finger protein 1 U2AF1 21 U2 small nuclear RNA auxiliary factor 1
SERPINB2 18 serpin peptidase inhibitor, clade B (ovalbumin), member 2 SERPINB8 18 serpin peptidase inhibitor, clade B (ovalbumin), member 8
AMMECR1 X Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 AMOT X angiomotin
 
 
  Affected Gene
  PubMed ID: 23622249 Case ID: PR-3042 Disease: Prostate cancer Genome Assembly: GRCh37/hg19
Gene Symbol Entrez Gene Chromosome Start End Description
AADAT 51166 4 170981373 171012850 aminoadipate aminotransferase
AFG3L2 10939 18 12328943 12377313 AFG3-like AAA ATPase 2
ALG10B 144245 12 38710380 38717784 ALG10B, alpha-1,2-glucosyltransferase
AMMECR1 9949 X 110194186 110440233 Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1
AMOT 154796 X 112774877 112840961 angiomotin
ANK2 287 4 113739265 114304896 ankyrin 2, neuronal
AP3B1 8546 5 77296349 77590579 adaptor-related protein complex 3, beta 1 subunit
AP4E1 23431 15 51200869 51298097 adaptor-related protein complex 4, epsilon 1 subunit
ARHGAP15 55843 2 143848931 144525921 Rho GTPase activating protein 15
ARSB 411 5 78073032 78281910 arylsulfatase B
ATP10B 23120 5 159990127 160279221 ATPase, class V, type 10B
ATP6V1H 51606 8 54628117 54756118 ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H
AVL9 23080 7 32535038 33078516 AVL9 homolog (S. cerevisiase)
BBS7 55212 4 122745595 122791652 Bardet-Biedl syndrome 7
C4orf32 132720 4 113066553 113116412 chromosome 4 open reading frame 32
C8orf59 401466 8 86126311 86132650 chromosome 8 open reading frame 59
CACNA1D 776 3 53528683 53847760 calcium channel, voltage-dependent, L type, alpha 1D subunit
CAMK2D 817 4 114372188 114683083 calcium/calmodulin-dependent protein kinase II delta
CAMK4 814 5 110559351 110830584 calcium/calmodulin-dependent protein kinase IV
CCDC102B 79839 18 66382446 66722426 coiled-coil domain containing 102B
CCDC109B 55013 4 110481361 110609874 coiled-coil domain containing 109B
CDH10 1008 5 24487209 24645087 cadherin 10, type 2 (T2-cadherin)
CDH12 1010 5 21750782 22853731 cadherin 12, type 2 (N-cadherin 2)
CDH2 1000 18 25530930 25757410 cadherin 2, type 1, N-cadherin (neuronal)
CDH6 1004 5 31193857 31329253 cadherin 6, type 2, K-cadherin (fetal kidney)
CHL1 10752 3 238279 451090 cell adhesion molecule L1-like
CLVS1 157807 8 61969717 62414204 clavesin 1
CNBD1 168975 8 87878670 88627447 cyclic nucleotide binding domain containing 1
COG6 57511 13 40229764 40365802 component of oligomeric golgi complex 6
COL25A1 84570 4 109731877 110223813 collagen, type XXV, alpha 1
COX7B2 170712 4 46736844 46911252 cytochrome c oxidase subunit VIIb2
CSMD1 64478 8 2792875 4852494 CUB and Sushi multiple domains 1
CSMD3 114788 8 113235157 114449328 CUB and Sushi multiple domains 3
CSTF1 1477 20 54967427 54979518 cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa
CYP7B1 9420 8 65500320 65711318 cytochrome P450, family 7, subfamily B, polypeptide 1
DCC 1630 18 49866542 51057784 DCC netrin 1 receptor
DDX60L 91351 4 169277886 169458937 DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like
DHFR 1719 5 79922047 79950802 dihydrofolate reductase
DMD 1756 X 31119219 33339609 dystrophin
DNAJB14 79982 4 100817405 100867883 DnaJ (Hsp40) homolog, subfamily B, member 14
DOCK1 1793 10 128593978 129250781 dedicator of cytokinesis 1
DTHD1 401124 4 36283244 36347378 death domain containing 1
DZIP1 22873 13 96230457 96296957 DAZ interacting zinc finger protein 1
E2F5 1875 8 86089460 86129387 E2F transcription factor 5, p130-binding
EGF 1950 4 110834040 110933422 epidermal growth factor
ELF1 1997 13 41506056 41635576 E74-like factor 1 (ets domain transcription factor)
EML5 161436 14 89078775 89259096 echinoderm microtubule associated protein like 5
ENPEP 2028 4 111286889 111486441 glutamyl aminopeptidase (aminopeptidase A)
EPB41L4A 64097 5 111478138 111755013 erythrocyte membrane protein band 4.1 like 4A
EPHA5 2044 4 66185281 66536213 EPH receptor A5
ERCC6 2074 10 50663414 50747584 excision repair cross-complementation group 6
ESRRG 2104 1 216676588 217311097 estrogen-related receptor gamma
EXOC4 60412 7 132937829 133751342 exocyst complex component 4
EYS 346007 6 64429876 66417118 eyes shut homolog (Drosophila)
FAM117B 150864 2 203499901 203634480 family with sequence similarity 117, member B
FBXL17 64839 5 107194736 107717799 F-box and leucine-rich repeat protein 17
FGD4 121512 12 32552463 32798984 FYVE, RhoGEF and PH domain containing 4
FSTL1 11167 3 120111140 120170100 follistatin-like 1
FSTL5 56884 4 162305049 163085187 follistatin-like 5
FUT9 10690 6 96463860 96663488 fucosyltransferase 9 (alpha (1,3) fucosyltransferase)
GALNTL6 442117 4 172733405 173962710 polypeptide N-acetylgalactosaminyltransferase-like 6
GGA1 26088 22 38004481 38029571 golgi-associated, gamma adaptin ear containing, ARF binding protein 1
GLRA3 8001 4 175558065 175750465 glycine receptor, alpha 3
GRB10 2887 7 50657760 50861159 growth factor receptor-bound protein 10
GRIA1 2890 5 152869175 153193429 glutamate receptor, ionotropic, AMPA 1
GRK5 2869 10 120967101 121215131 G protein-coupled receptor kinase 5
GSK3B 2932 3 119540170 119813264 glycogen synthase kinase 3 beta
GUCY1A2 2977 11 106544738 106889250 guanylate cyclase 1, soluble, alpha 2
HCN1 348980 5 45259349 45696253 hyperpolarization activated cyclic nucleotide gated potassium channel 1
HEY1 23462 8 80676245 80680098 hes-related family bHLH transcription factor with YRPW motif 1
HOMER1 9456 5 78668459 78810040 homer homolog 1 (Drosophila)
IFIH1 64135 2 163123589 163175213 interferon induced with helicase C domain 1
IFT80 57560 3 159974774 160117668 intraflagellar transport 80
INPP5A 3632 10 134351324 134596979 inositol polyphosphate-5-phosphatase, 40kDa
IQGAP2 10788 5 75699074 76003957 IQ motif containing GTPase activating protein 2
ITM2A 9452 X 79360384 79367552 integral membrane protein 2A
ITPR2 3709 12 26490342 26986131 inositol 1,4,5-trisphosphate receptor, type 2
KBTBD7 84078 13 41763969 41768702 kelch repeat and BTB (POZ) domain containing 7
KCNB2 9312 8 73449626 73850584 potassium channel, voltage gated Shab related subfamily B, member 2
KIAA0355 9710 19 34745442 34846491 KIAA0355
KIRREL3 84623 11 126293254 126873355 kin of IRRE like 3 (Drosophila)
KPNA4 3840 3 160212783 160283376 karyopherin alpha 4 (importin alpha 3)
LAMA2 3908 6 129204342 129837714 laminin, alpha 2
LCP2 3937 5 169673241 169725231 lymphocyte cytosolic protein 2 (SH2 domain containing leukocyte protein of 76kDa)
LRP1B 53353 2 140988992 142889270 low density lipoprotein receptor-related protein 1B
LRRC58 116064 3 120043356 120068186 leucine rich repeat containing 58
LSAMP 4045 3 115521235 117716095 limbic system-associated membrane protein
MCC 4163 5 112357796 112824527 mutated in colorectal cancers
MECOM 2122 3 168801287 169381406 MDS1 and EVI1 complex locus
MEGF10 84466 5 126626523 126801429 multiple EGF-like-domains 10
MEI1 150365 22 42095503 42195460 meiosis inhibitor 1
MMP16 4325 8 89044237 89340254 matrix metallopeptidase 16 (membrane-inserted)
MRPS28 28957 8 80830952 80942524 mitochondrial ribosomal protein S28
NAALAD2 10003 11 89864683 89926062 N-acetylated alpha-linked acidic dipeptidase 2
NEK1 4750 4 170314426 170533780 NIMA-related kinase 1
NKAIN2 154215 6 124125286 125146803 Na+/K+ transporting ATPase interacting 2
NKAIN3 286183 8 63161150 63912211 Na+/K+ transporting ATPase interacting 3
NSMAF 8439 8 59496063 59572403 neutral sphingomyelinase (N-SMase) activation associated factor
ODF2L 57489 1 86814344 86862023 outer dense fiber of sperm tails 2-like
OPCML 4978 11 132284871 133402414 opioid binding protein/cell adhesion molecule-like
OR52I1 390037 11 4615037 4616243 olfactory receptor, family 52, subfamily I, member 1
PCDH7 5099 4 30722037 31148422 protocadherin 7
PCYT1B 9468 X 24558087 24672862 phosphate cytidylyltransferase 1, choline, beta
PDE7A 5150 8 66629745 66754557 phosphodiesterase 7A
PDZD2 23037 5 31639517 32111037 PDZ domain containing 2
PEMT 10400 17 17408877 17495022 phosphatidylethanolamine N-methyltransferase
PHF3 23469 6 64345725 64489229 PHD finger protein 3
PIKFYVE 200576 2 209130991 209223475 phosphoinositide kinase, FYVE finger containing
PKIA 5569 8 79428374 79517502 protein kinase (cAMP-dependent, catalytic) inhibitor alpha
PKIB 5570 6 122793076 123047518 protein kinase (cAMP-dependent, catalytic) inhibitor beta
PLCL1 5334 2 198669426 199437305 phospholipase C-like 1
PLS3 5358 X 115560850 115650861 plastin 3
PPM1L 151742 3 160473390 160796695 protein phosphatase, Mg2+/Mn2+ dependent, 1L
PRDM6 93166 5 122424816 122529960 PR domain containing 6
PRKCA 5578 17 64298754 64806861 protein kinase C, alpha
PTPRJ 5795 11 48002113 48189670 protein tyrosine phosphatase, receptor type, J
RAB38 23682 11 87846410 87908635 RAB38, member RAS oncogene family
ROBO1 6091 3 78646390 79816965 roundabout, axon guidance receptor, homolog 1 (Drosophila)
ROBO2 6092 3 75955846 77699115 roundabout, axon guidance receptor, homolog 2 (Drosophila)
RRH 10692 4 110749150 110765760 retinal pigment epithelium-derived rhodopsin homolog
SCHIP1 29970 3 159557650 159615149 schwannomin interacting protein 1
SCLT1 132320 4 129786076 130014764 sodium channel and clathrin linker 1
SDR16C5 195814 8 57212569 57233335 short chain dehydrogenase/reductase family 16C, member 5
SERPINB2 5055 18 61538926 61571124 serpin peptidase inhibitor, clade B (ovalbumin), member 2
SERPINB8 5271 18 61637159 61672278 serpin peptidase inhibitor, clade B (ovalbumin), member 8
SERPINI2 5276 3 167159577 167196792 serpin peptidase inhibitor, clade I (pancpin), member 2
SGCZ 137868 8 13947373 15095848 sarcoglycan, zeta
SI 6476 3 164696686 164796283 sucrase-isomaltase (alpha-glucosidase)
SLC22A3 6581 6 160769300 160876014 solute carrier family 22 (organic cation transporter), member 3
SLC25A15 10166 13 41363548 41384247 solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15
SLCO1A2 6579 12 21417534 21572528 solute carrier organic anion transporter family, member 1A2
SMC4 10051 3 160117062 160152750 structural maintenance of chromosomes 4
SMC6 79677 2 17845079 17981509 structural maintenance of chromosomes 6
SNCAIP 9627 5 121647049 121799914 synuclein, alpha interacting protein
SOX5 6660 12 23682440 24103966 SRY (sex determining region Y)-box 5
SPIN4 139886 X 63347228 63351339 spindlin family, member 4
SSBP2 23635 5 80708840 81047616 single-stranded DNA binding protein 2
STXBP5L 9515 3 120626919 121143608 syntaxin binding protein 5-like
TAF1A 9015 1 222731244 222763275 TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa
TCERG1L 256536 10 132890654 133109984 transcription elongation regulator 1-like
THNSL1 79896 10 25305587 25315593 threonine synthase-like 1 (S. cerevisiae)
THSD7B 80731 2 137523115 138435287 thrombospondin, type I, domain containing 7B
TMEM132D 121256 12 129556270 130388211 transmembrane protein 132D
TOMM70A 9868 3 100082275 100120242 translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae)
TOX 9760 8 59717977 60031767 thymocyte selection-associated high mobility group box
TRAPPC9 83696 8 140742586 141468678 trafficking protein particle complex 9
TRDN 10345 6 123537483 123958238 triadin
TRIM55 84675 8 67039131 67087720 tripartite motif containing 55
U2AF1 7307 21 44513066 44527697 U2 small nuclear RNA auxiliary factor 1
UGGT2 55757 13 96453834 96705736 UDP-glucose glycoprotein glucosyltransferase 2
VPS54 51542 2 64119280 64246206 vacuolar protein sorting 54 homolog (S. cerevisiae)
VWC2 375567 7 49813257 49961546 von Willebrand factor C domain containing 2
WDR41 55255 5 76721795 76916436 WD repeat domain 41
WDR49 151790 3 167196472 167371771 WD repeat domain 49
WWTR1 25937 3 149235022 149454501 WW domain containing transcription regulator 1
XKR4 114786 8 56014949 56454613 XK, Kell blood group complex subunit-related family, member 4
ZNF717 100131827 3 75758794 75834734 zinc finger protein 717
ZNF804A 91752 2 185463093 185804219 zinc finger protein 804A
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© 2015 Cai Laboratory.  Last updated on 13 Mar 2018