ChromothripsisDB: a curated database of chromothripsis
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	Fusion Gene
	PubMed ID: 23622249	Case ID: PR-02-1431	Disease: Prostate cancer	Genome Assembly: GRCh37/hg19
Gene Symbol 1 Chromosome1 Description 1 Gene Symbol 2 Chromosome2 Description 2 AGPS 2 alkylglycerone phosphate synthase ASNSD1 2 asparagine synthetase domain containing 1 BACH2 6 BTB and CNC homology 1, basic leucine zipper transcription factor 2 TRDN 6 triadin CADM2 3 cell adhesion molecule 2 MYO5C 15 myosin VC CADM2 3 cell adhesion molecule 2 UNC13C 15 unc-13 homolog C (C. elegans) CNTNAP5 2 contactin associated protein-like 5 ABCA13 7 ATP-binding cassette, sub-family A (ABC1), member 13 DIAPH3 13 diaphanous-related formin 3 GPC5 13 glypican 5 FBXO33 14 F-box protein 33 LRFN5 14 leucine rich repeat and fibronectin type III domain containing 5 GRID2 4 glutamate receptor, ionotropic, delta 2 SMARCAD1 4 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 KHDRBS3 8 KH domain containing, RNA binding, signal transduction associated 3 COL22A1 8 collagen, type XXII, alpha 1 LRRTM4 2 leucine rich repeat transmembrane neuronal 4 GABRA2 4 gamma-aminobutyric acid (GABA) A receptor, alpha 2 NRXN1 2 neurexin 1 LRRTM4 2 leucine rich repeat transmembrane neuronal 4 SMARCA2 9 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 KDM4C 9 lysine (K)-specific demethylase 4C SNTG1 8 syntrophin, gamma 1 PXDNL 8 peroxidasin-like TNNI3K 1 TNNI3 interacting kinase SLC44A5 1 solute carrier family 44, member 5 VLDLR 9 very low density lipoprotein receptor IFT74 9 intraflagellar transport 74

	Affected Gene
	PubMed ID: 23622249	Case ID: PR-02-1431	Disease: Prostate cancer	Genome Assembly: GRCh37/hg19
Gene Symbol Entrez Gene Chromosome Start End Description ABCA13 154664 7 48211055 48687092 ATP-binding cassette, sub-family A (ABC1), member 13 AGPS 8540 2 178257372 178408564 alkylglycerone phosphate synthase ARPP19 10776 15 52839242 52862080 cAMP-regulated phosphoprotein, 19kDa ASCC3 10973 6 100956070 101329248 activating signal cointegrator 1 complex subunit 3 ASNSD1 54529 2 190526111 190535557 asparagine synthetase domain containing 1 BACH2 60468 6 90636248 91006627 BTB and CNC homology 1, basic leucine zipper transcription factor 2 C8orf46 254778 8 67372238 67430759 chromosome 8 open reading frame 46 CADM2 253559 3 85008132 86123579 cell adhesion molecule 2 CHD1 1105 5 98190908 98262240 chromodomain helicase DNA binding protein 1 CNGB3 54714 8 87566205 87755903 cyclic nucleotide gated channel beta 3 CNTNAP2 26047 7 145813453 148118090 contactin associated protein-like 2 CNTNAP5 129684 2 124782864 125672864 contactin associated protein-like 5 COL22A1 169044 8 139600478 139926249 collagen, type XXII, alpha 1 CSMD1 64478 8 2792875 4852494 CUB and Sushi multiple domains 1 CSMD3 114788 8 113235157 114449328 CUB and Sushi multiple domains 3 CTAGE5 4253 14 39734488 39856156 CTAGE family, member 5 CTNNA2 1496 2 79412357 80875905 catenin (cadherin-associated protein), alpha 2 DGKB 1607 7 14184674 15014402 diacylglycerol kinase, beta 90kDa DIAPH3 81624 13 60239717 60738121 diaphanous-related formin 3 DMD 1756 X 31119219 33339609 dystrophin EFCAB1 79645 8 49623348 49647870 EF-hand calcium binding domain 1 FAM155A 728215 13 107820883 108519083 family with sequence similarity 155, member A FAT3 120114 11 92085262 92629618 FAT atypical cadherin 3 FBXO33 254170 14 39866873 39901704 F-box protein 33 FIGN 55137 2 164449906 164592522 fidgetin GABRA2 2555 4 46250444 46477247 gamma-aminobutyric acid (GABA) A receptor, alpha 2 GALNT13 114805 2 154728426 155310361 polypeptide N-acetylgalactosaminyltransferase 13 GPC5 2262 13 92050929 93519490 glypican 5 GRID2 2895 4 93225550 94695707 glutamate receptor, ionotropic, delta 2 GTF3C3 9330 2 197627756 197664449 general transcription factor IIIC, polypeptide 3, 102kDa IFT74 80173 9 26947037 27062928 intraflagellar transport 74 ITGB8 3696 7 20370325 20455377 integrin, beta 8 JAK2 3717 9 4985033 5128183 Janus kinase 2 KDM4C 23081 9 6720863 7175648 lysine (K)-specific demethylase 4C KHDRBS3 10656 8 136469700 136668965 KH domain containing, RNA binding, signal transduction associated 3 LINGO2 158038 9 27948076 28670283 leucine rich repeat and Ig domain containing 2 LMBR1 64327 7 156461646 156685924 limb development membrane protein 1 LRFN5 145581 14 42076773 42373752 leucine rich repeat and fibronectin type III domain containing 5 LRP1B 53353 2 140988992 142889270 low density lipoprotein receptor-related protein 1B LRRTM4 80059 2 76974845 77820445 leucine rich repeat transmembrane neuronal 4 LYRM4 57128 6 5102827 5261172 LYR motif containing 4 MAGI2 9863 7 77646393 79082890 membrane associated guanylate kinase, WW and PDZ domain containing 2 MCTP1 79772 5 94039446 94620279 multiple C2 domains, transmembrane 1 MLANA 2315 9 5890802 5910606 melan-A MRPS28 28957 8 80830952 80942524 mitochondrial ribosomal protein S28 MYO5A 4644 15 52599480 52821247 myosin VA (heavy chain 12, myoxin) MYO5C 55930 15 52484519 52587995 myosin VC MYO6 4646 6 76458909 76629254 myosin VI NECAB1 64168 8 91803778 91971636 N-terminal EF-hand calcium binding protein 1 NRG1 3084 8 31496902 32622548 neuregulin 1 NRXN1 9378 2 50145643 51259674 neurexin 1 NUP160 23279 11 47799639 47870107 nucleoporin 160kDa OPCML 4978 11 132284871 133402414 opioid binding protein/cell adhesion molecule-like OR8G1 26494 11 124120423 124135763 olfactory receptor, family 8, subfamily G, member 1 (gene/pseudogene) P2RY10 27334 X 78945332 78963727 purinergic receptor P2Y, G-protein coupled, 10 PLAA 9373 9 26904081 26947461 phospholipase A2-activating protein PPM1L 151742 3 160473390 160796695 protein phosphatase, Mg2+/Mn2+ dependent, 1L PXDNL 137902 8 52232138 52722005 peroxidasin-like RCL1 10171 9 4792869 4885917 RNA terminal phosphate cyclase-like 1 SEMA3E 9723 7 82993222 83278326 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E SLC19A2 10560 1 169433147 169455241 solute carrier family 19 (thiamine transporter), member 2 SLC44A5 204962 1 75667816 76076801 solute carrier family 44, member 5 SMARCA2 6595 9 2015342 2193624 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 SMARCAD1 56916 4 95128762 95212443 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 SNTG1 54212 8 50822349 51706678 syntrophin, gamma 1 SPATA21 374955 1 16713612 16763919 spermatogenesis associated 21 TDRD3 81550 13 60970591 61148012 tudor domain containing 3 TERF1 7013 8 73921099 73960357 telomeric repeat binding factor (NIMA-interacting) 1 TNNI3K 51086 1 74663947 75010112 TNNI3 interacting kinase TRAPPC9 83696 8 140742586 141468678 trafficking protein particle complex 9 TRDN 10345 6 123537483 123958238 triadin UNC13C 440279 15 54305101 54920806 unc-13 homolog C (C. elegans) VLDLR 7436 9 2621834 2660053 very low density lipoprotein receptor WDR72 256764 15 53805938 54055075 WD repeat domain 72 top

Chromothripsis database. 2025 Cai Laboratory