ChromothripsisDB: a curated database of chromothripsis
 
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  Fusion Gene
  PubMed ID: 24553141 Case ID: ST1 Disease: Ependymoma Genome Assembly: GRCh37/hg19
Gene Symbol 1 Chromosome1 Description 1 Gene Symbol 2 Chromosome2 Description 2
C1orf95 1 chromosome 1 open reading frame 95 RELA 11 v-rel avian reticuloendotheliosis viral oncogene homolog A
HDHD1 X haloacid dehalogenase-like hydrolase domain containing 1 MACROD1 11 MACRO domain containing 1
PRG2 11 proteoglycan 2, bone marrow (natural killer cell activator, eosinophil granule major basic protein) C11orf95 11 chromosome 11 open reading frame 95
 
 
  Affected Gene
  PubMed ID: 24553141 Case ID: ST1 Disease: Ependymoma Genome Assembly: GRCh37/hg19
Gene Symbol Entrez Gene Chromosome Start End Description
RS1 6247 X 18639688 18672103 retinoschisin 1
SLC1A5 6510 19 47278140 47291851 solute carrier family 1 (neutral amino acid transporter), member 5
P4HA1 5033 10 74766975 74856732 prolyl 4-hydroxylase, alpha polypeptide I
ALG13 79868 X 111680742 111764164 ALG13, UDP-N-acetylglucosaminyltransferase subunit
ZNF827 152485 4 146678779 146859787 zinc finger protein 827
EFHC2 80258 X 44146254 44343677 EF-hand domain (C-terminal) containing 2
SEC22A 26984 3 122920774 122992977 SEC22 vesicle trafficking protein homolog A (S. cerevisiae)
TRANK1 9881 3 36868311 36986548 tetratricopeptide repeat and ankyrin repeat containing 1
PRKX 5613 X 3604343 3713644 protein kinase, X-linked
GPC3 2719 X 133535745 133985646 glypican 3
HDHD1 8226 X 7048920 7148190 haloacid dehalogenase-like hydrolase domain containing 1
SSX3 10214 X 48346428 48356753 synovial sarcoma, X breakpoint 3
ATG4A 115201 X 108088916 108154671 autophagy related 4A, cysteine peptidase
IL1RAPL1 11141 X 28587564 29956350 interleukin 1 receptor accessory protein-like 1
GLRA2 2742 X 14448779 14731812 glycine receptor, alpha 2
SH3KBP1 30011 X 19533965 19887626 SH3-domain kinase binding protein 1
IL1RAPL2 26280 X 104566199 105769729 interleukin 1 receptor accessory protein-like 2
DIAPH2 1730 X 96684663 97600598 diaphanous-related formin 2
DACH2 117154 X 86148451 86832602 dachshund family transcription factor 2
ERCC6L 54821 X 72204657 72239008 excision repair cross-complementation group 6-like
PIN4 5303 X 72181676 72263964 peptidylprolyl cis/trans isomerase, NIMA-interacting 4
MRPL16 54948 11 59573608 59578345 mitochondrial ribosomal protein L16
STX3 6809 11 59480929 59573354 syntaxin 3
PRPSAP2 5636 17 18743398 18834581 phosphoribosyl pyrophosphate synthetase-associated protein 2
UNG 7374 12 109535379 109548797 uracil-DNA glycosylase
C11orf95 65998 11 63527364 63536113 chromosome 11 open reading frame 95
FTX 100302692 X 74028136 74293574 FTX transcript, XIST regulator (non-protein coding)
MAOB 4129 X 43766610 43882475 monoamine oxidase B
OR9Q1 219956 11 57791353 57949088 olfactory receptor, family 9, subfamily Q, member 1
TEX11 56159 X 70525561 70908717 testis expressed 11
MSX2 4488 5 174151536 174157896 msh homeobox 2
SYN1 6853 X 47571901 47619857 synapsin I
PLS3 5358 X 115560850 115650861 plastin 3
TTC9C 283237 11 62495541 62507765 tetratricopeptide repeat domain 9C
TMCC1 23023 3 129366635 129612419 transmembrane and coiled-coil domain family 1
ATP7A 538 X 77910656 78050395 ATPase, Cu++ transporting, alpha polypeptide
POLA1 5422 X 24693874 24996986 polymerase (DNA directed), alpha 1, catalytic subunit
DDX3X 1654 X 41333308 41364472 DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked
KIAA1217 56243 10 23983675 24836772 KIAA1217
PCDH11X 27328 X 91779311 92623230 protocadherin 11 X-linked
DMD 1756 X 31119219 33339609 dystrophin
ATRX 546 X 77504878 77786269 alpha thalassemia/mental retardation syndrome X-linked
LRCH2 57631 X 115110616 115234075 leucine-rich repeats and calponin homology (CH) domain containing 2
REPS2 9185 X 16946691 17220732 RALBP1 associated Eps domain containing 2
VSTM2A 222008 7 54610018 54638773 V-set and transmembrane domain containing 2A
KDM6A 7403 X 44873175 45112779 lysine (K)-specific demethylase 6A
DIO2 1734 14 80663873 80854100 deiodinase, iodothyronine, type II
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© 2015 Cai Laboratory.  Last updated on 13 Mar 2018