ChromothripsisDB: a curated database of chromothripsis
 
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  Fusion Gene
  PubMed ID: 24462510 Case ID: 172T Disease: Hepatocellular carcinoma Genome Assembly: GRCh37/hg19
Gene Symbol 1 Chromosome1 Description 1 Gene Symbol 2 Chromosome2 Description 2
CAMKMT 2 calmodulin-lysine N-methyltransferase PPM1B 2 protein phosphatase, Mg2+/Mn2+ dependent, 1B
CPD 17 carboxypeptidase D SLC6A4 17 solute carrier family 6 (neurotransmitter transporter), member 4
EXOC3 5 exocyst complex component 3 CCT5 5 chaperonin containing TCP1, subunit 5 (epsilon)
FARS2 6 phenylalanyl-tRNA synthetase 2, mitochondrial BMP6 6 bone morphogenetic protein 6
MARCH6 5 membrane-associated ring finger (C3HC4) 6, E3 ubiquitin protein ligase PDCD6 5 programmed cell death 6
RBPMS 8 RNA binding protein with multiple splicing PDGFRL 8 platelet-derived growth factor receptor-like
RPS6KA3 X ribosomal protein S6 kinase, 90kDa, polypeptide 3 SH3KBP1 X SH3-domain kinase binding protein 1
SDHA 5 succinate dehydrogenase complex, subunit A, flavoprotein (Fp) FAM134B 5 family with sequence similarity 134, member B
TPPP 5 tubulin polymerization promoting protein SDHA 5 succinate dehydrogenase complex, subunit A, flavoprotein (Fp)
TRIO 5 trio Rho guanine nucleotide exchange factor MARCH11 5 membrane-associated ring finger (C3HC4) 11
 
 
  Affected Gene
  PubMed ID: 24462510 Case ID: 172T Disease: Hepatocellular carcinoma Genome Assembly: GRCh37/hg19
Gene Symbol Entrez Gene Chromosome Start End Description
ADCY2 108 5 7396321 7830194 adenylate cyclase 2 (brain)
AHRR 57491 5 304291 438406 aryl-hydrocarbon receptor repressor
ANKH 56172 5 14704910 14871887 ANKH inorganic pyrophosphate transport regulator
ARMC6 93436 19 19144384 19170563 armadillo repeat containing 6
ATP8A1 10396 4 42410390 42659122 ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1
BMP6 654 6 7727030 7881655 bone morphogenetic protein 6
BRMS1L 84312 14 36295524 36401531 breast cancer metastasis-suppressor 1-like
BTBD9 114781 6 38136227 38607924 BTB (POZ) domain containing 9
CAMKMT 79823 2 44589089 44999731 calmodulin-lysine N-methyltransferase
CCT5 22948 5 10250033 10266524 chaperonin containing TCP1, subunit 5 (epsilon)
CDH18 1016 5 19473060 20575982 cadherin 18, type 2
CPD 1362 17 28705923 28797007 carboxypeptidase D
CSMD1 64478 8 2792875 4852494 CUB and Sushi multiple domains 1
CTNND2 1501 5 10971952 11904155 catenin (cadherin-associated protein), delta 2
DCC 1630 18 49866542 51057784 DCC netrin 1 receptor
DIAPH2 1730 X 96684663 97600598 diaphanous-related formin 2
DNAJC25 548645 9 114393632 114432508 DnaJ (Hsp40) homolog, subfamily C , member 25
EXOC3 11336 5 443273 472052 exocyst complex component 3
EYA1 2138 8 72109668 72274467 EYA transcriptional coactivator and phosphatase 1
EYS 346007 6 64429876 66417118 eyes shut homolog (Drosophila)
FAM134B 54463 5 16473147 16617167 family with sequence similarity 134, member B
FARS2 10667 6 5261277 5771813 phenylalanyl-tRNA synthetase 2, mitochondrial
FHIT 2272 3 59735036 61237133 fragile histidine triad
FLT4 2324 5 180028506 180076624 fms-related tyrosine kinase 4
GPC6 10082 13 93879095 95059655 glypican 6
KCNU1 157855 8 36641842 36793646 potassium channel, subfamily U, member 1
LCA5L 150082 21 40777770 40817731 Leber congenital amaurosis 5-like
LNP1 348801 3 100120037 100175163 leukemia NUP98 fusion partner 1
LPCAT1 79888 5 1456595 1524092 lysophosphatidylcholine acyltransferase 1
LPP 4026 3 187871072 188608460 LIM domain containing preferred translocation partner in lipoma
LSM1 27257 8 38020839 38034248 LSM1, U6 small nuclear RNA associated
MACROD2 140733 20 13976015 16033842 MACRO domain containing 2
MDGA1 266727 6 37600284 37667082 MAM domain containing glycosylphosphatidylinositol anchor 1
ME1 4199 6 83920108 84140797 malic enzyme 1, NADP(+)-dependent, cytosolic
MTRR 4552 5 7851299 7906138 5-methyltetrahydrofolate-homocysteine methyltransferase reductase
MYO10 4651 5 16665395 16936372 myosin X
MYT1L 23040 2 1792885 2335032 myelin transcription factor 1-like
NSUN2 54888 5 6599352 6633404 NOP2/Sun RNA methyltransferase family, member 2
PAPD7 11044 5 6714718 6757161 PAP associated domain containing 7
PDGFRL 5157 8 17433942 17501580 platelet-derived growth factor receptor-like
PPM1B 5495 2 44395108 44471523 protein phosphatase, Mg2+/Mn2+ dependent, 1B
PTGR1 22949 9 114312002 114362135 prostaglandin reductase 1
RBPMS 11030 8 30241944 30429778 RNA binding protein with multiple splicing
RPS6KA3 6197 X 20149911 20267095 ribosomal protein S6 kinase, 90kDa, polypeptide 3
SDHA 6389 5 218356 256815 succinate dehydrogenase complex, subunit A, flavoprotein (Fp)
SEMA5A 9037 5 9035138 9546187 sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A
SETD5 55209 3 9439299 9520924 SET domain containing 5
SH3KBP1 30011 X 19533965 19887626 SH3-domain kinase binding protein 1
SLC6A3 6531 5 1392909 1445545 solute carrier family 6 (neurotransmitter transporter), member 3
SLC6A4 6532 17 28521337 28563020 solute carrier family 6 (neurotransmitter transporter), member 4
SLCO5A1 81796 8 70579282 70747299 solute carrier organic anion transporter family, member 5A1
TAF4B 6875 18 23805900 23971649 TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa
TMEM170B 100113407 6 11537938 11583757 transmembrane protein 170B
TOMM70A 9868 3 100082275 100120242 translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae)
TPPP 11076 5 660883 693510 tubulin polymerization promoting protein
TRIO 7204 5 14143811 14532235 trio Rho guanine nucleotide exchange factor
UBE2QL1 134111 5 6448736 6495022 ubiquitin-conjugating enzyme E2Q family-like 1
VSTM4 196740 10 50222290 50323554 V-set and transmembrane domain containing 4
XPO5 57510 6 43490072 43543812 exportin 5
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