ChromothripsisDB: a curated database of chromothripsis
 
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  Fusion Gene
  PubMed ID: 24462510 Case ID: 64T Disease: Hepatocellular carcinoma Genome Assembly: GRCh37/hg19
Gene Symbol 1 Chromosome1 Description 1 Gene Symbol 2 Chromosome2 Description 2
LARP4B 10 La ribonucleoprotein domain family, member 4B NCALD 8 neurocalcin delta
RAD21 8 RAD21 homolog (S. pombe) EXT1 8 exostosin glycosyltransferase 1
 
 
  Affected Gene
  PubMed ID: 24462510 Case ID: 64T Disease: Hepatocellular carcinoma Genome Assembly: GRCh37/hg19
Gene Symbol Entrez Gene Chromosome Start End Description
ADCY8 114 8 131792547 132054672 adenylate cyclase 8 (brain)
AK8 158067 9 135600965 135754164 adenylate kinase 8
ARHGEF38 54848 4 106473777 106629250 Rho guanine nucleotide exchange factor (GEF) 38
ARID1A 8289 1 27022524 27108595 AT rich interactive domain 1A (SWI-like)
ATAD2 29028 8 124332090 124428590 ATPase family, AAA domain containing 2
CILP2 148113 19 19649057 19657468 cartilage intermediate layer protein 2
CRTC1 23373 19 18794487 18893004 CREB regulated transcription coactivator 1
CSMD3 114788 8 113235157 114449328 CUB and Sushi multiple domains 3
EIF3H 8667 8 117654369 117779164 eukaryotic translation initiation factor 3, subunit H
EXT1 2131 8 118806729 119124092 exostosin glycosyltransferase 1
FER1L6 654463 8 124864227 125132302 fer-1-like family member 6
FZD6 8323 8 104310661 104345094 frizzled class receptor 6
GATAD2A 54815 19 19496635 19619740 GATA zinc finger domain containing 2A
GTPBP4 23560 10 1034338 1065876 GTP binding protein 4
INPP4B 8821 4 142944313 143768585 inositol polyphosphate-4-phosphatase, type II, 105kDa
IST1 9798 16 71879899 71962913 increased sodium tolerance 1 homolog (yeast)
KCNN1 3780 19 18062102 18110889 potassium channel, calcium activated intermediate/small conductance subfamily N alpha, member 1
KCNQ3 3786 8 133133108 133493200 potassium channel, voltage gated KQT-like subfamily Q, member 3
LAPTM4B 55353 8 98787285 98865241 lysosomal protein transmembrane 4 beta
LARP4B 23185 10 855484 977564 La ribonucleoprotein domain family, member 4B
LPIN1 23175 2 11817721 11967535 lipin 1
LRRC6 23639 8 133584320 133687838 leucine rich repeat containing 6
LSM14A 26065 19 34663409 34720420 LSM14A, SCD6 homolog A (S. cerevisiae)
LYN 4067 8 56792372 56923940 LYN proto-oncogene, Src family tyrosine kinase
MICALCL 84953 11 12297627 12380691 MICAL C-terminal like
NCALD 83988 8 102698771 103137135 neurocalcin delta
PABPC1 26986 8 101698044 101735037 poly(A) binding protein, cytoplasmic 1
PKD1L3 342372 16 71963441 72033877 polycystic kidney disease 1-like 3
RAB11FIP1 80223 8 37716136 37756985 RAB11 family interacting protein 1 (class I)
RAD21 5885 8 117858174 117887105 RAD21 homolog (S. pombe)
RGS22 26166 8 100973164 101143496 regulator of G-protein signaling 22
RRM2B 50484 8 103216730 103251346 ribonucleotide reductase M2 B (TP53 inducible)
SLC10A7 84068 4 147175127 147443123 solute carrier family 10, member 7
STK3 6788 8 99413631 99955055 serine/threonine kinase 3
USH2A 7399 1 215796236 216596738 Usher syndrome 2A (autosomal recessive, mild)
VPS13A 23230 9 79792269 80036457 vacuolar protein sorting 13 homolog A (S. cerevisiae)
ZFAT 57623 8 135490031 135725292 zinc finger and AT hook domain containing
ZNF704 619279 8 81540686 81787016 zinc finger protein 704
ZNF827 152485 4 146678779 146859787 zinc finger protein 827
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© 2015 Cai Laboratory.  Last updated on 13 Mar 2018