ChromothripsisDB: a curated database of chromothripsis
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	Fusion Gene
	PubMed ID: 24462510	Case ID: 117T	Disease: Hepatocellular carcinoma	Genome Assembly: GRCh37/hg19
Gene Symbol 1 Chromosome1 Description 1 Gene Symbol 2 Chromosome2 Description 2 CASC1 12 cancer susceptibility candidate 1 LPCAT3 12 lysophosphatidylcholine acyltransferase 3 CNIH4 1 cornichon family AMPA receptor auxiliary protein 4 MAPKAPK2 1 mitogen-activated protein kinase-activated protein kinase 2 DENND1B 1 DENN/MADD domain containing 1B KCNT2 1 potassium channel, sodium activated subfamily T, member 2 DENND1B 1 DENN/MADD domain containing 1B NMNAT2 1 nicotinamide nucleotide adenylyltransferase 2 DENND1B 1 DENN/MADD domain containing 1B PARP1 1 poly (ADP-ribose) polymerase 1 ETV3 1 ets variant 3 KCNT2 1 potassium channel, sodium activated subfamily T, member 2 FAM78B 1 family with sequence similarity 78, member B IQGAP3 1 IQ motif containing GTPase activating protein 3 GATAD2B 1 GATA zinc finger domain containing 2B NSL1 1 NSL1, MIS12 kinetochore complex component IL19 1 interleukin 19 NMNAT2 1 nicotinamide nucleotide adenylyltransferase 2 IQGAP3 1 IQ motif containing GTPase activating protein 3 KCNT2 1 potassium channel, sodium activated subfamily T, member 2 IQGAP3 1 IQ motif containing GTPase activating protein 3 NMNAT2 1 nicotinamide nucleotide adenylyltransferase 2 KCNT2 1 potassium channel, sodium activated subfamily T, member 2 DENND1B 1 DENN/MADD domain containing 1B LAMC2 1 laminin, gamma 2 KCNT2 1 potassium channel, sodium activated subfamily T, member 2 NMNAT2 1 nicotinamide nucleotide adenylyltransferase 2 DENND1B 1 DENN/MADD domain containing 1B NMNAT2 1 nicotinamide nucleotide adenylyltransferase 2 DPT 1 dermatopontin NSL1 1 NSL1, MIS12 kinetochore complex component GATAD2B 1 GATA zinc finger domain containing 2B PARP1 1 poly (ADP-ribose) polymerase 1 DENND1B 1 DENN/MADD domain containing 1B PARP1 1 poly (ADP-ribose) polymerase 1 INTS3 1 integrator complex subunit 3 PARP1 1 poly (ADP-ribose) polymerase 1 NMNAT2 1 nicotinamide nucleotide adenylyltransferase 2 PARP1 1 poly (ADP-ribose) polymerase 1 PPP2R5A 1 protein phosphatase 2, regulatory subunit B', alpha PDS5A 4 PDS5 cohesin associated factor A APBB2 4 amyloid beta (A4) precursor protein-binding, family B, member 2 PPP2R5A 1 protein phosphatase 2, regulatory subunit B', alpha NMNAT2 1 nicotinamide nucleotide adenylyltransferase 2 RPS6KC1 1 ribosomal protein S6 kinase, 52kDa, polypeptide 1 ABL2 1 ABL proto-oncogene 2, non-receptor tyrosine kinase RPS6KC1 1 ribosomal protein S6 kinase, 52kDa, polypeptide 1 NMNAT2 1 nicotinamide nucleotide adenylyltransferase 2 SLC35F3 1 solute carrier family 35, member F3 RIT1 1 Ras-like without CAAX 1 ZC3H11A 1 zinc finger CCCH-type containing 11A PARP1 1 poly (ADP-ribose) polymerase 1

	Affected Gene
	PubMed ID: 24462510	Case ID: 117T	Disease: Hepatocellular carcinoma	Genome Assembly: GRCh37/hg19
Gene Symbol Entrez Gene Chromosome Start End Description ABL2 27 1 179068462 179198819 ABL proto-oncogene 2, non-receptor tyrosine kinase APBB2 323 4 40812044 41218731 amyloid beta (A4) precursor protein-binding, family B, member 2 ARNT 405 1 150782181 150849244 aryl hydrocarbon receptor nuclear translocator BICD1 636 12 32259769 32536567 bicaudal D homolog 1 (Drosophila) CASC1 55259 12 25261354 25348096 cancer susceptibility candidate 1 CCDC91 55297 12 28286182 28732883 coiled-coil domain containing 91 CD247 919 1 167399877 167487847 CD247 molecule CFHR4 10877 1 196819371 196888102 complement factor H-related 4 CFHR5 81494 1 196946667 196978804 complement factor H-related 5 CNIH4 29097 1 224544552 224567161 cornichon family AMPA receptor auxiliary protein 4 CTNNA2 1496 2 79412357 80875905 catenin (cadherin-associated protein), alpha 2 DDAH1 23576 1 85784164 86043933 dimethylarginine dimethylaminohydrolase 1 DENND1B 163486 1 197473878 197744826 DENN/MADD domain containing 1B DPT 1805 1 168664697 168698502 dermatopontin ETV3 2117 1 157090983 157108266 ets variant 3 EXO1 9156 1 242011269 242058450 exonuclease 1 FAM78B 149297 1 166026674 166136206 family with sequence similarity 78, member B GATAD2B 57459 1 153777201 153895451 GATA zinc finger domain containing 2B HS3ST4 9951 16 25703347 26149009 heparan sulfate (glucosamine) 3-O-sulfotransferase 4 IL19 29949 1 206972215 207016324 interleukin 19 IL6R 3570 1 154377669 154441926 interleukin 6 receptor INTS3 65123 1 153700543 153746555 integrator complex subunit 3 IQGAP3 128239 1 156495197 156542396 IQ motif containing GTPase activating protein 3 IRF6 3664 1 209959036 209979465 interferon regulatory factor 6 KCNT2 343450 1 196194909 196578355 potassium channel, sodium activated subfamily T, member 2 LAMC2 3918 1 183155373 183214035 laminin, gamma 2 LHX9 56956 1 197881037 197904608 LIM homeobox 9 LIX1L 128077 1 145477085 145501669 Lix1 homolog (chicken) like LPCAT3 10162 12 7085348 7125814 lysophosphatidylcholine acyltransferase 3 MAPKAPK2 9261 1 206858289 206907628 mitogen-activated protein kinase-activated protein kinase 2 MTX1 4580 1 155178490 155183615 metaxin 1 NMNAT2 23057 1 183217372 183387737 nicotinamide nucleotide adenylyltransferase 2 NOS1AP 9722 1 162039564 162353321 nitric oxide synthase 1 (neuronal) adaptor protein NR5A2 2494 1 199996730 200146552 nuclear receptor subfamily 5, group A, member 2 NSL1 25936 1 212899495 212965124 NSL1, MIS12 kinetochore complex component OLFML2B 25903 1 161952982 161993644 olfactomedin-like 2B PARP1 142 1 226548392 226595780 poly (ADP-ribose) polymerase 1 PDILT 204474 16 20370492 20416059 protein disulfide isomerase-like, testis expressed PDS5A 23244 4 39824483 39979576 PDS5 cohesin associated factor A PIGR 5284 1 207101863 207119811 polymeric immunoglobulin receptor PIP5K1A 8394 1 151170425 151222012 phosphatidylinositol-4-phosphate 5-kinase, type I, alpha PLEKHA6 22874 1 204187979 204346793 pleckstrin homology domain containing, family A member 6 POLI 11201 18 51795774 51847636 polymerase (DNA directed) iota PPP2R5A 5525 1 212458879 212535200 protein phosphatase 2, regulatory subunit B', alpha PRKG1 5592 10 52750945 54058110 protein kinase, cGMP-dependent, type I RIT1 6016 1 155867599 155881195 Ras-like without CAAX 1 RPS6KC1 26750 1 213224589 213448116 ribosomal protein S6 kinase, 52kDa, polypeptide 1 RYR2 6262 1 237205505 237997288 ryanodine receptor 2 (cardiac) SERINC2 347735 1 31882412 31907525 serine incorporator 2 SLC35F3 148641 1 234040679 234460262 solute carrier family 35, member F3 SPATA13 221178 13 24553944 24881212 spermatogenesis associated 13 TBCE 6905 1 235530675 235612283 tubulin folding cofactor E TSHZ2 128553 20 51588946 52111869 teashirt zinc finger homeobox 2 VASH2 79805 1 213123862 213165379 vasohibin 2 ZC3H11A 9877 1 203764782 203823252 zinc finger CCCH-type containing 11A top

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