StudyType	PubMedID	Author	Title	Journal	PublishDate	Chromosome	Disease	Technology	Species	CaseID	Platform	CNA	Connection	Gene	Affiliation	Abstract	GenomeAssembly	GEO	dbGaP	ENA	IsCancer	FusionGene
Research	22980976	Govindan R, Ding L, Griffith M, Subramanian J, Dees ND, Kanchi KL, Maher CA, Fulton R, Fulton L, Wallis J, Chen K, Walker J, McDonald S, Bose R, Ornitz D, Xiong D, You M, Dooling DJ, Watson M, Mardis ER, Wilson RK	Genomic landscape of non-small cell lung cancer in smokers and never-smokers	Cell	2012 Sep	5,10,12,17,20	Non Small-cell lung cancer	Next Generation Sequencing	Homo sapiens	LUC7	Illumina	chr10:0-42644756:0;chr10:42644757-42644997:1;chr10:42644998-42680939:0;chr10:42680940-42681264:1;chr10:42681265-42832236:0;chr10:42832237-42833689:1;chr10:42833690-42903614:0;chr10:42903615-42970797:1;chr10:42970798-42970989:0;chr10:42970990-42990784:1;chr10:42990785-43008961:0;chr10:43008962-43048280:1;chr10:43048281-43062123:0;chr10:43062124-43062931:1;chr10:43062932-43156174:0;chr10:43156175-43157224:1;chr10:43157225-43169643:0;chr10:43169644-43187171:1;chr10:43187172-43189817:0;chr10:43189818-43210023:1;chr10:43191482-43201901:1;chr10:43210024-43221303:0;chr10:43221304-43232607:1;chr10:43232608-43277952:0;chr10:43277953-43330385:1;chr10:43330386-43366967:0;chr10:43366968-43369508:1;chr10:43369509-43474463:0;chr10:43474464-43476955:1;chr10:43476956-43572473:0;chr10:43572474-43625799:1;chr10:43625800-43633932:0;chr10:43633933-43680756:1;chr10:43680757-43689981:0;chr10:43689982-43762367:1;chr10:43762368-44124263:0;chr10:44124264-44170151:1;chr10:44126329-44127012:1;chr10:44126394-44126830:1;chr10:44170152-44236883:0;chr10:44236884-44237798:1;chr10:44237799-44273008:0;chr10:44273009-44274273:1;chr10:44274274-44340752:0;chr10:44340753-44346070:1;chr10:44346071-44407890:0;chr10:44407891-44409684:1;chr10:44409346-44409954:1;chr10:44409955-44434449:0;chr10:44434450-44439914:1;chr10:44439915-44755048:0;chr10:44755049-44757261:1;chr10:44757262-44787704:0;chr10:44787705-44789157:1;chr10:44789158-44793036:0;chr10:44793037-44881941:1;chr10:44881942-44910095:0;chr10:44910096-44910601:1;chr10:44910602-45086654:0;chr10:45086655-45097552:1;chr10:45097553-46111037:0;chr10:46111038-46168261:1;chr10:46168262-46951470:0;chr10:46951471-46966835:1;chr10:46952761-46971400:1;chr10:46971401-46993544:0;chr10:46993545-47005643:1;chr10:47005644-47011751:0;chr10:47011752-47174018:1;chr10:47083533-47088320:1;chr10:47096453-47099716:1;chr10:47133337-47133898:1;chr10:47174019-47556163:0;chr10:47556164-47566804:1;chr10:47566805-47594377:0;chr10:47594378-47595651:1;chr10:47595652-47620143:0;chr10:47620144-47644793:1;chr10:47644794-47658232:0;chr10:47658233-47701446:1;chr10:47701447-48324786:0;chr10:48324787-48332197:1;chr10:48332198-48355022:0;chr10:48355023-48373866:1;chr10:48357925-48358600:1;chr10:48373867-48381485:0;chr10:48381486-48390991:1;chr10:48390992-48413090:0;chr10:48413091-48416853:1;chr10:48416854-48425783:0;chr10:48425784-48439166:1;chr10:48439167-49360854:0;chr10:49360855-49482941:1;chr10:49407710-49409697:1;chr10:49482942-49500740:0;chr10:49500741-49501460:1;chr10:49501461-49514688:0;chr10:49514689-49647403:1;chr10:49647404-49654075:0;chr10:49654076-49864310:1;chr10:49718567-49719632:1;chr10:49754516-49754758:1;chr10:49832048-49833138:1;chr10:49864311-49872242:0;chr10:49872243-49880469:1;chr10:49880470-50184595:0;chr10:50184596-50186927:1;chr10:50186928-50192607:0;chr10:50192608-50226942:1;chr10:50222332-50323559:1;chr10:50323560-50329882:0;chr10:50329883-50359592:1;chr10:50339198-50342065:1;chr10:50359593-50362771:0;chr10:50362772-50396630:1;chr10:50396631-50504155:0;chr10:50504156-50507063:1;chr10:50507064-50507185:0;chr10:50507186-50535537:1;chr10:50535538-50572235:0;chr10:50572236-50603986:1;chr10:50603987-50627321:0;chr10:50627322-50680949:1;chr10:50663413-50747584:1;chr10:50723150-50747584:1;chr10:50747585-50817139:0;chr10:50817140-50901939:1;chr10:50818346-50820766:1;chr10:50887683-50918307:1;chr10:50911034-50911419:1;chr10:50918308-50942685:0;chr10:50942686-50970425:1;chr10:50970426-50979885:0;chr10:50979886-50981345:1;chr10:50981346-51023140:0;chr10:51023141-51023608:1;chr10:51023609-51532100:0;chr10:51532101-51532572:1;chr10:51532573-51535124:0;chr10:51535125-51535474:1;chr10:51535475-51549496:0;chr10:51549497-51562590:1;chr10:51562591-51565106:0;chr10:51565107-51590734:1;chr10:51590735-52024736:0;chr10:52024737-52026575:1;chr10:52026576-52065343:0;chr10:52065344-52384923:1;chr10:52232573-52234006:1;chr10:52384924-135374737:0;chr11:0-134452384:0;chr12:0-55224301:0;chr12:55224302-55252177:1;chr12:55252178-55341800:0;chr12:55341801-55378530:1;chr12:55378531-55413727:0;chr12:55413728-55423801:1;chr12:55423802-55587664:0;chr12:55587665-55588570:1;chr12:55588571-55640980:0;chr12:55640981-55642086:1;chr12:55642087-55656321:0;chr12:55656322-55657215:1;chr12:55657216-55705617:0;chr12:55705618-55706541:1;chr12:55706542-55714343:0;chr12:55714344-55715408:1;chr12:55715409-55770580:0;chr12:55770581-55771520:1;chr12:55771521-55782227:0;chr12:55782228-55783158:1;chr12:55783159-55794212:0;chr12:55794213-55795289:1;chr12:55795290-55845996:0;chr12:55845997-55846936:1;chr12:55846937-55862982:0;chr12:55862983-55863922:1;chr12:55863923-57316936:0;chr12:57316937-57328189:1;chr12:57328190-57345214:0;chr12:57345215-57353158:1;chr12:57348915-57400297:1;chr12:57388229-57390469:1;chr12:57400298-57403779:0;chr12:57403780-57422667:1;chr12:57422300-57444982:1;chr12:57444983-57449424:0;chr12:57449425-57481846:1;chr12:57481847-57489185:0;chr12:57489186-57525922:1;chr12:57522275-57607134:1;chr12:57588286-57588359:1;chr12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of Internal Medicine, Division of Oncology, Washington University School of Medicine, St. Louis, MO 63110, USA	We report the results of whole-genome and transcriptome sequencing of tumor and adjacent normal tissue samples from 17 patients with non-small cell lung carcinoma (NSCLC). We identified 3,726 point mutations and more than 90 indels in the coding sequence, with an average mutation frequency more than 10-fold higher in smokers than in never-smokers. Novel alterations in genes involved in chromatin modification and DNA repair pathways were identified, along with DACH1, CFTR, RELN, ABCB5, and HGF. Deep digital sequencing revealed diverse clonality patterns in both never-smokers and smokers. All validated EFGR and KRAS mutations were present in the founder clones, suggesting possible roles in cancer initiation. Analysis revealed 14 fusions, including ROS1 and ALK, as well as novel metabolic enzymes. Cell-cycle and JAK-STAT pathways are significantly altered in lung cancer, along with perturbations in 54 genes that are potentially targetable with currently available drugs.	NCBI 36/hg18				Yes	CDH12,C17orf28;COL23A1,PPM1H;FAM19A2,ANKFN1;FRS2,KCNMB4;RASSF3,TTYH2;SGMS1,STK10;TNIP1,GRIP1